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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | GSVIVT01019971001 | ||||||||
| Common Name | LOC100255052, VIT_01s0026g02550 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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| Family | G2-like | ||||||||
| Protein Properties | Length: 297aa MW: 32662.5 Da PI: 7.2919 | ||||||||
| Description | G2-like family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 105.3 | 3.6e-33 | 10 | 64 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kprl+WtpeLH+rFveav++LGG++kAtPkt++++m+v+gLtl+h+kSHLQkYRl
GSVIVT01019971001 10 KPRLKWTPELHHRFVEAVAHLGGPDKATPKTLMRVMGVPGLTLYHLKSHLQKYRL 64
79****************************************************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51294 | 12.012 | 7 | 67 | IPR017930 | Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 6.8E-31 | 8 | 66 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 2.15E-16 | 9 | 65 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 2.0E-23 | 10 | 65 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 1.4E-8 | 12 | 63 | IPR001005 | SANT/Myb domain |
| Pfam | PF14379 | 1.9E-21 | 108 | 154 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 297 aa Download sequence Send to blast |
MSLVLSTDAK PRLKWTPELH HRFVEAVAHL GGPDKATPKT LMRVMGVPGL TLYHLKSHLQ 60 KYRLGKSQQA ETFSDNNQED YCENQNREIH FDRETGDGTQ NPINESLQIA QALQVQLEVQ 120 RKLHEHIEVQ RHLQLRIEAQ GKYLQSVLKK AQETLAGYNS SSVGVELAKA ELTQLVSIFD 180 TGCPSSSFSE LTETGGSGLK DKERKPMRGT GCSLESSLTS SESSGRKEEK QPKNENGNTN 240 KCTSMAPTLM EIHPGDSQAW KSGSSNQASG RKRNGSTISD GNCVEQPSAI DLNCKE* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6j4k_A | 7e-19 | 9 | 66 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4k_B | 7e-19 | 9 | 66 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_A | 6e-19 | 10 | 66 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_B | 6e-19 | 10 | 66 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_C | 6e-19 | 10 | 66 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_D | 6e-19 | 10 | 66 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_A | 7e-19 | 9 | 66 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_C | 7e-19 | 9 | 66 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_D | 7e-19 | 9 | 66 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_F | 7e-19 | 9 | 66 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_H | 7e-19 | 9 | 66 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_J | 7e-19 | 9 | 66 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase | ||||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | FQ384079 | 0.0 | FQ384079.1 Vitis vinifera clone SS0AAG41YM20. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010651953.1 | 0.0 | PREDICTED: myb family transcription factor PHL8 | ||||
| Swissprot | F4I274 | 2e-86 | PHL8_ARATH; Myb family transcription factor PHL8 | ||||
| TrEMBL | F6HPQ8 | 0.0 | F6HPQ8_VITVI; Uncharacterized protein | ||||
| STRING | VIT_01s0026g02550.t01 | 0.0 | (Vitis vinifera) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Representative plant | OGRP78 | 17 | 262 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G69580.1 | 5e-87 | G2-like family protein | ||||
| Link Out ? help Back to Top | |
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| Phytozome | GSVIVT01019971001 |
| Entrez Gene | 100255052 |
| Publications ? help Back to Top | |||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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