PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01019981001

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

ZF-HD

Protein Properties

Length: 215aa MW: 23393.5 Da PI: 8.8199

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01019981001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	99.3	2.8e-31	27	82	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++ Y +C+kNhAa+ Gg+avDGC+Efm+s geegt +alkCaACgCHRnFHRrev+ GSVIVT01019981001 27 SISYGQCQKNHAAKSGGYAVDGCREFMAS-GEEGTREALKCAACGCHRNFHRREVDA 82 679***********************9.999*******************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	1.0E-20	23	83	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.8E-29	28	80	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	2.0E-25	30	80	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	25.643	30	79	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MKKCEVVIKG AKEQGKSSSS SSVTLKSISY GQCQKNHAAK SGGYAVDGCR EFMASGEEGT 60 REALKCAACG CHRNFHRREV DADQSYGKMM KMILLMMVIK TTSLLIVVAV AIDIVETIGG 120 GKANYSVMTV VIVVVIAANI SLTKSVLVVV HPNLEHPFAN TNFIAELFNQ TLIALLHLPP 180 QFFREREHLL LLLLTELGAK PLSSIWDVLP RHLV*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.6894	0.0	bud\| fruit\| leaf

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM431514	0.0	AM431514.2 Vitis vinifera contig VV78X039809.13, whole genome shotgun sequence.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP91	16	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28917.1	4e-28	mini zinc finger 2

Link Out ? help Back to Top
Phytozome	GSVIVT01019981001