PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01020121001
Common NameLOC100265665, VIT_01s0026g01140
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 209aa    MW: 22804.3 Da    PI: 8.707
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01020121001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.95.8e-1192139455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  GSVIVT01020121001  92 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 139
                        8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.92E-1086143No hitNo description
SuperFamilySSF474594.45E-1886156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-1888157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.82888138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-892139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-1094144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MVLERSGGRK RRDAATEDEG GKAVSTSGGG NVANDCDGKR LKTSGSRDEN RDSKTEVETS  60
SGKPVEQNPQ SADPPKQDFI HVRARRGQAT DSHSLAERAR REKISERMKI LQDLVPGCNK  120
VIGKALVLDE IINYIQSLQR QVEFLSMKLE AVNSRMNSGI EGFPSKDFGQ QTFDAAGVAY  180
SSQATREYGR ASSPEWLHMQ VGGGFDRT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.34260.0bud| fruit
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3807410.0FQ380741.1 Vitis vinifera clone SS0ACG35YM08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002272776.11e-151PREDICTED: transcription factor bHLH79
SwissprotQ69WS32e-81BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A438JNN21e-150A0A438JNN2_VITVI; Transcription factor BHLH094
TrEMBLF6HPI21e-150F6HPI2_VITVI; Uncharacterized protein
STRINGVIT_01s0026g01140.t011e-151(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.11e-86BIG PETAL P