PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01020155001
Common NameVIT_01s0026g00850
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C2H2
Protein Properties Length: 248aa    MW: 27640.8 Da    PI: 7.8614
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01020155001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.0002784106123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C++C k F ++  L  H++ H
  GSVIVT01020155001  84 FECQYCFKEFANSQALGGHQNAH 106
                        89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.0E-579110IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.63E-681111No hitNo description
PROSITE profilePS5015711.40684111IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010026Biological Processtrichome differentiation
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MEKDGSSLLS PISDGEHGDS AGTSVEKKLR LFGFELDPYK KGESCLKESV ERDESVNSSN  60
TDSSGREKPS IEKNSTVEPE DKKFECQYCF KEFANSQALG GHQNAHKKER MKKKRLQLQA  120
RKASINHYLQ PLQNNHSFTY HGSALWFYDP SCQSPDDESQ ISFTPFDQDA HLKKSQFSKW  180
YAPPANLPLQ QDTCMFTLTH PDGSGQNKPA IIKPSPLPVS KQNCKSLDLQ LGLSVQPNIR  240
SSSRSGI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.83920.0cell culture| pedicel
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4472390.0AM447239.1 Vitis vinifera contig VV78X242690.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003631292.20.0PREDICTED: zinc finger protein 5 isoform X2
RefseqXP_010652954.10.0PREDICTED: zinc finger protein 5 isoform X1
TrEMBLD7TNK90.0D7TNK9_VITVI; Uncharacterized protein
STRINGVIT_01s0026g00850.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1020968
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.15e-16zinc finger protein 5