PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01020561001
Common NameVIT_12s0028g03550
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 216aa    MW: 24156.1 Da    PI: 5.3741
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01020561001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.24.6e-112372455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
                HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                         +++E++RR+ +++ +++L +llP +   +sk   s  + + +Av YIksLq
  GSVIVT01020561001 23 ERKIVEKNRRNLMKNLYSKLNSLLPDQ---SSKEaQSIPDQVDEAVSYIKSLQ 72
                       5789**********************8...56666*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.1091971IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-112188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.69E-52176No hitNo description
SuperFamilySSF474595.23E-112190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-72372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00232577IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MGFGKREDNM ESTSHSSSVS KAERKIVEKN RRNLMKNLYS KLNSLLPDQS SKEAQSIPDQ  60
VDEAVSYIKS LQGNLEKLKE KKESLMSSRK RPHTCSTTSV GETSTPSLRS PVMEIREMGS  120
NLQVTLVTGL EDQSIFYDII GILHEESAEV LSASFSVVGN SAFHVLIAQV GDSTFSFGTK  180
WICDRLNKFV HGSTSEEELQ PELWDFEFHP ETWAF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.215760.0flower
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4293670.0AM429367.2 Vitis vinifera contig VV78X063574.2, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002274262.21e-158PREDICTED: transcription factor bHLH36
TrEMBLA0A438JKH31e-156A0A438JKH3_VITVI; Transcription factor bHLH162
STRINGVIT_12s0028g03550.t011e-150(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13451147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.16e-27bHLH family protein