PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01020584001
Common NameLOC100242144, VIT_12s0028g03270
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 212aa    MW: 22854.5 Da    PI: 7.185
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01020584001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.55.2e-211666155
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       ++++GVr ++ +gr++AeIrdp++   + r++lg+f+taeeAa+a++aa+++++g
  GSVIVT01020584001 16 PHFRGVRKRP-WGRYAAEIRDPTK---KSRVWLGTFDTAEEAAQAYDAAAREFRG 66
                       689*******.**********864...6************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.00E-181674No hitNo description
PfamPF008473.4E-141666IPR001471AP2/ERF domain
SMARTSM003805.0E-391780IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-321774IPR001471AP2/ERF domain
PROSITE profilePS5103223.7881774IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-221775IPR016177DNA-binding domain
PRINTSPR003678.4E-111829IPR001471AP2/ERF domain
PRINTSPR003678.4E-114056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MALKEKVKEG VKAKEPHFRG VRKRPWGRYA AEIRDPTKKS RVWLGTFDTA EEAAQAYDAA  60
AREFRGSKAK TNFPLPNEVL PFPNTDNLTR SPSPSSTVES SSPHAPLELD LTRRLGSSDG  120
GFPFHYQPHV VNSAAVAGVW PHARPVLFLD AFVGAEGFRV NPVTVAYDGG FGSPVQSESD  180
SSSVVDSVQH ESSGATRVLG LDLNFPPPLE A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-231375164ATERF1
3gcc_A5e-231375164ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.97090.0bud| flower| fruit| inflorescence| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, mostly in root tip, lateral root tips, cortex and vascular tissues. {ECO:0000269|PubMed:10945353}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3781710.0FQ378171.1 Vitis vinifera clone SS0AEB14YG06.
GenBankFQ3784760.0FQ378476.1 Vitis vinifera clone SS0AEB13YH09.
GenBankFQ3793610.0FQ379361.1 Vitis vinifera clone SS0AEB10YK18.
GenBankFQ3797810.0FQ379781.1 Vitis vinifera clone SS0AEA1YG11.
GenBankFQ3853100.0FQ385310.1 Vitis vinifera clone SS0AEB32YK13.
GenBankFQ3877350.0FQ387735.1 Vitis vinifera clone SS0AEB25YI01.
GenBankFQ3890980.0FQ389098.1 Vitis vinifera clone SS0AEB20YN14.
GenBankFQ3897980.0FQ389798.1 Vitis vinifera clone SS0AEB19YK07.
GenBankFQ3952600.0FQ395260.1 Vitis vinifera clone SS0AFA16YN01.
GenBankFQ3953700.0FQ395370.1 Vitis vinifera clone SS0AFA16YE10.
GenBankFQ3959320.0FQ395932.1 Vitis vinifera clone SS0AFA12YP21.
GenBankFQ3977930.0FQ397793.1 Vitis vinifera clone SS0AEB5YK17.
GenBankFQ3979750.0FQ397975.1 Vitis vinifera clone SS0AEB5YB20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002276215.11e-152PREDICTED: ethylene-responsive transcription factor 4
SwissprotQ9LW491e-53ERF4_NICSY; Ethylene-responsive transcription factor 4
TrEMBLE0CTG91e-151E0CTG9_VITVI; Uncharacterized protein
STRINGVIT_12s0028g03270.t011e-152(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.11e-25erf domain protein 9