PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01020605001

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

HB-other

Protein Properties

Length: 1871aa MW: 210572 Da PI: 4.9137

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01020605001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.5	2.3e-18	18	74	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++kR t++qle+Le+ ++ + yps++ r+eL++klgL++rq ++WF+ rR k++k GSVIVT01020605001 18 KSKRKMKTASQLEILEKTYAVETYPSETLRAELSAKLGLSDRQLQMWFCHRRLKDRK 74 679****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.8E-17	4	74	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.73	15	75	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.74E-15	15	74	IPR009057	Homeodomain-like
SMART	SM00389	1.8E-15	17	79	IPR001356	Homeobox domain
Pfam	PF00046	4.8E-16	18	74	IPR001356	Homeobox domain
CDD	cd00086	1.17E-13	18	75	No hit	No description
SMART	SM00571	7.6E-23	699	758	IPR018501	DDT domain
PROSITE profile	PS50827	17.399	699	758	IPR018501	DDT domain
Pfam	PF02791	1.6E-17	700	755	IPR018501	DDT domain
Pfam	PF05066	2.0E-14	881	948	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	2.2E-9	1099	1142	IPR028942	WHIM1 domain
Pfam	PF15613	1.6E-12	1284	1356	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1871 aa Download sequence Send to blast
MEGGAEEEKK KAPEGENKSK RKMKTASQLE ILEKTYAVET YPSETLRAEL SAKLGLSDRQ 60 LQMWFCHRRL KDRKTPPVKR PRKDSPVKVT SSAAGTPVRE EMEVGNEHPS GSGSGSSPFG 120 HVLESRRVVP RPGTAVARIG ADMPPMKRYY EPPQPISELR AIAFVEAQLG EPLREDGPIL 180 GMEFDPLPPD AFGAPIATVG QQKQGVRPYE TKLYERPDAK PIKVSLYSLA FFIVSDEGFM 240 NEKEYKIFAP CSFVICLDIF MIYVSFLCVI LFFDMFLFKS LSPFLCCNPL KIFWVLLDKY 300 PLHELYMNFE VLQLIRHLLY PLGHYITQSP RLYRSTLPIG LENETCARLQ LFLEIFSLNE 360 RNVIVDLGML YLQGAGRAVH EYQFLPEQPS VRTDTYERVG SHYYGSPADG PSARASLSTG 420 RSFMHGNEQV ASGYGFQGQM PNLNLLSQQG RQNHGLSSTS GDYDTVPRKN SLGSIGMDAH 480 FGSHPITALD NPFISSDRRV TNDEDVLRME RKRKSEEARI AKEVEAHEKR IRKELEKQDI 540 LRRKREEQMR KEMERHDRER RKEEERLLRE KQREEERYQR EQRRELERRE KFLQKESIRA 600 EKMRQKEELR REKEAARVKA ANDRAIARRI AKESMELIED ERLELMELVA LSKGLPSILS 660 LDSETLQNLE SFRDMLTAFP PKSVQLRRPF TIQPWTDSEE NIGNLLMVWR FLITFSDVLG 720 LWPFTMDEFV QAFHDYDPRL LGEIHVALLR SIIKDIEDVA RTPSIGLGAN QNSAANPGGG 780 HPQIVEGAYA WGFDIRSWQR HLNPLTWPEI LRQFALSAGF GPKLKKRNVE ETYLRDDNEG 840 NDCEDIITNL RSGAAAENAV AIMQERGFSN PRRSRHRLTP GTVKFAAFHV LSLEGSKGLT 900 ILEVADKIQK SGLRDLTTSK TPEASIAAAL SRDGKLFERT APSTYCVRPA YRKDPADADA 960 ILSAAREKIQ IFKSGCSDGE EADDVERDED SESDVVEDPE VDDLGADPNL KKEAQNSYEA 1020 DGFQSKSVSE NEKETLFAEA METKGGLENA GEGLSSTHSE GFKEVISTGA SADQSIDVAG 1080 ISNKPTNPDQ EDTDIDESNS GEPWVQGLME GEYSDLSVEE RLNALVALIG VAIEGNSIRI 1140 VLEERLEAAN ALKKQMWAEA QLDKRRMKEE YVMKMHYPSF MGNKTEQNVT MSTTEGRQSP 1200 MVAVDEKNNE LSMNPVVHPE PFSDPQNDQS FLNNLPPERN LPMQDFSAGP ENIPLQLPGY 1260 AAEKSRSQLK SYIGHKAEEM YVYRSLPLGQ DRRRNRYWQF ITSASRNDPN SGRIFVELRN 1320 GCWRLIDSEE GFDALVASLD ARGVREAHLQ SMLQRIEISF KETVRRNLQL SSIGRQNSPS 1380 STVCVSNSDA TEPSASFSIE LGRNDAEKFD ALNRYQDFEK WMWKECINPS TLCALKYGKK 1440 SPLDSNYSEH VAQCEEKHKV DLEWGFSSSS DSSPLRIKLL KAHLALIEVS VLPEALQPDW 1500 TDTYRKSWGM KLHASSSAED LIQILTLLES NIRRDYLSSD FETTNELLGL SNASGCAVDD 1560 SLAAGSVPVL PWIPQTTAAV AIRLIELDAS ISYMLHQKLE SHKDKGANDF IRVPAKFSVM 1620 KNMQDDESAE APIEAVHLRD ENWVEMGSGH TSSGRGRGGR RGRGRTRGGR SQRRVIGSRS 1680 ESSKRSSAAN NEKLGLLGWK GRTRGRGGRR RGRRTVRSRQ KPVKQVVEDI PEEIIFKPPP 1740 RNLDREWNVE TPTREPVEEA ENVSSSESSE EYDDDNGQGT GDECDDLGVD EYSGPFNGKS 1800 EDVIEESDEI GDGDEDEEEE GEEEEDDEGD VDVGGYIIGD SDEERNGYED GGHTGVGDEG 1860 GGYASSDYSE *

Sequence ? help Back to Top

Protein Sequence Length: 1871 aa Download sequence Send to blast

MEGGAEEEKK KAPEGENKSK RKMKTASQLE ILEKTYAVET YPSETLRAEL SAKLGLSDRQ  60
LQMWFCHRRL KDRKTPPVKR PRKDSPVKVT SSAAGTPVRE EMEVGNEHPS GSGSGSSPFG  120
HVLESRRVVP RPGTAVARIG ADMPPMKRYY EPPQPISELR AIAFVEAQLG EPLREDGPIL  180
GMEFDPLPPD AFGAPIATVG QQKQGVRPYE TKLYERPDAK PIKVSLYSLA FFIVSDEGFM  240
NEKEYKIFAP CSFVICLDIF MIYVSFLCVI LFFDMFLFKS LSPFLCCNPL KIFWVLLDKY  300
PLHELYMNFE VLQLIRHLLY PLGHYITQSP RLYRSTLPIG LENETCARLQ LFLEIFSLNE  360
RNVIVDLGML YLQGAGRAVH EYQFLPEQPS VRTDTYERVG SHYYGSPADG PSARASLSTG  420
RSFMHGNEQV ASGYGFQGQM PNLNLLSQQG RQNHGLSSTS GDYDTVPRKN SLGSIGMDAH  480
FGSHPITALD NPFISSDRRV TNDEDVLRME RKRKSEEARI AKEVEAHEKR IRKELEKQDI  540
LRRKREEQMR KEMERHDRER RKEEERLLRE KQREEERYQR EQRRELERRE KFLQKESIRA  600
EKMRQKEELR REKEAARVKA ANDRAIARRI AKESMELIED ERLELMELVA LSKGLPSILS  660
LDSETLQNLE SFRDMLTAFP PKSVQLRRPF TIQPWTDSEE NIGNLLMVWR FLITFSDVLG  720
LWPFTMDEFV QAFHDYDPRL LGEIHVALLR SIIKDIEDVA RTPSIGLGAN QNSAANPGGG  780
HPQIVEGAYA WGFDIRSWQR HLNPLTWPEI LRQFALSAGF GPKLKKRNVE ETYLRDDNEG  840
NDCEDIITNL RSGAAAENAV AIMQERGFSN PRRSRHRLTP GTVKFAAFHV LSLEGSKGLT  900
ILEVADKIQK SGLRDLTTSK TPEASIAAAL SRDGKLFERT APSTYCVRPA YRKDPADADA  960
ILSAAREKIQ IFKSGCSDGE EADDVERDED SESDVVEDPE VDDLGADPNL KKEAQNSYEA  1020
DGFQSKSVSE NEKETLFAEA METKGGLENA GEGLSSTHSE GFKEVISTGA SADQSIDVAG  1080
ISNKPTNPDQ EDTDIDESNS GEPWVQGLME GEYSDLSVEE RLNALVALIG VAIEGNSIRI  1140
VLEERLEAAN ALKKQMWAEA QLDKRRMKEE YVMKMHYPSF MGNKTEQNVT MSTTEGRQSP  1200
MVAVDEKNNE LSMNPVVHPE PFSDPQNDQS FLNNLPPERN LPMQDFSAGP ENIPLQLPGY  1260
AAEKSRSQLK SYIGHKAEEM YVYRSLPLGQ DRRRNRYWQF ITSASRNDPN SGRIFVELRN  1320
GCWRLIDSEE GFDALVASLD ARGVREAHLQ SMLQRIEISF KETVRRNLQL SSIGRQNSPS  1380
STVCVSNSDA TEPSASFSIE LGRNDAEKFD ALNRYQDFEK WMWKECINPS TLCALKYGKK  1440
SPLDSNYSEH VAQCEEKHKV DLEWGFSSSS DSSPLRIKLL KAHLALIEVS VLPEALQPDW  1500
TDTYRKSWGM KLHASSSAED LIQILTLLES NIRRDYLSSD FETTNELLGL SNASGCAVDD  1560
SLAAGSVPVL PWIPQTTAAV AIRLIELDAS ISYMLHQKLE SHKDKGANDF IRVPAKFSVM  1620
KNMQDDESAE APIEAVHLRD ENWVEMGSGH TSSGRGRGGR RGRGRTRGGR SQRRVIGSRS  1680
ESSKRSSAAN NEKLGLLGWK GRTRGRGGRR RGRRTVRSRQ KPVKQVVEDI PEEIIFKPPP  1740
RNLDREWNVE TPTREPVEEA ENVSSSESSE EYDDDNGQGT GDECDDLGVD EYSGPFNGKS  1800
EDVIEESDEI GDGDEDEEEE GEEEEDDEGD VDVGGYIIGD SDEERNGYED GGHTGVGDEG  1860
GGYASSDYSE *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.21679	0.0	leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269\|PubMed:22694359}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM457473	0.0	AM457473.2 Vitis vinifera contig VV78X112028.14, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002275272.1	0.0	PREDICTED: homeobox-DDT domain protein RLT2 isoform X2
Refseq	XP_010657007.1	0.0	PREDICTED: homeobox-DDT domain protein RLT2 isoform X1
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A438JKM0	0.0	A0A438JKM0_VITVI; Homeobox-DDT domain protein RLT2
STRING	VIT_12s0028g03090.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1577	16	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	GSVIVT01020605001