PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01020658001

Common Name

LOC100243740, VIT_12s0028g02590

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

bZIP

Protein Properties

Length: 296aa MW: 33260 Da PI: 6.4084

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01020658001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33	1.3e-10	172	215	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 kr +r NR +A+rsR RK+++i eLe+ v +L++e + L + GSVIVT01020658001 172 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQTEVSVLSPR 215 8999*******************************998777655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.3E-13	168	232	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	4.6E-9	170	217	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.588	170	222	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.0E-13	172	223	No hit	No description
SuperFamily	SSF57959	2.25E-11	172	226	No hit	No description
CDD	cd14703	4.24E-24	173	223	No hit	No description
PROSITE pattern	PS00036	0	175	190	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MAQLPPKVPA MAANWPSFPH QKIPSMGNLA PPATQNPSWV DEFLDFSSAK RGTHRRSVSD 60 SIAFFEAPDD CRNSGAAPRP PGAGNEFDQF DDEQFMSMFT DAMAPTISSS NPSTPSDHYS 120 FNEEKTTTIE QQQQQQQLKN ESEEVQSSCK LESQTPPQPS MTTSNDRIVD PKRVKRILAN 180 RQSAQRSRVR KLQYISELER SVTSLQTEVS VLSPRVAFLD HQRLLLNVDN SALKQRIAAL 240 AQDKIFKDAH QDALKREIER LRQVYHQQNL KTTENAAPPT ASDVKDFKEE DVLNH*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator. {ECO:0000269\|PubMed:17719007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM477156	0.0	AM477156.2 Vitis vinifera contig VV78X205240.10, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002275912.1	0.0	PREDICTED: basic leucine zipper 61
Swissprot	Q9M2K4	1e-115	BZP61_ARATH; Basic leucine zipper 61
TrEMBL	E0CTM6	0.0	E0CTM6_VITVI; Uncharacterized protein
STRING	VIT_12s0028g02590.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP126	17	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58120.1	1e-109	bZIP family protein

Link Out ? help Back to Top
Phytozome	GSVIVT01020658001
Entrez Gene	100243740

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]