PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01020688001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 209aa    MW: 22974.3 Da    PI: 10.1835
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01020688001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-12551354
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                       ++h+e+ErrRR riN  +++Lr ++P       kK++Ka+ L ++v ++k+L
  GSVIVT01020688001  5 KNHSEAERRRRGRINAHLATLRGIIPGT-----KKMDKASLLGEVVSHLKEL 51
                       58*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.485251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.92E-11553No hitNo description
PfamPF000101.9E-10551IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-13653IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.11E-13657IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-12857IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.2E-490146No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MVALKNHSEA ERRRRGRINA HLATLRGIIP GTKKMDKASL LGEVVSHLKE LKRSAAEISK  60
GFLVPMDIDE VRVEQQEGGL DEAPYSIKAS LCCDYKPGVL SDLRRALDTV HLKTVRAEIA  120
TLGGRMKNVF VMTGCKDGNL EDTETRKLHA NSVHQALRSV LDKFPASQDF SSRSTSSNKR  180
QRISIFNSSS SSPFGDFCGH GEAPILRR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.145110.0bud| flower| inflorescence| stem
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4425400.0AM442540.1 Vitis vinifera contig VV78X041585.12, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002280074.11e-142PREDICTED: transcription factor bHLH30
TrEMBLF6H4Y91e-141F6H4Y9_VITVI; Uncharacterized protein
STRINGVIT_12s0028g02350.t011e-142(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.14e-37bHLH family protein