PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01020718001

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

G2-like

Protein Properties

Length: 278aa MW: 31513.4 Da PI: 7.2834

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01020718001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.6	1e-31	93	146	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+e+AtPk +l+lm+v gL+++hvkSHLQ+YR+ GSVIVT01020718001 93 PRLRWTPDLHLAFVNAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRS 146 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.8E-30	89	147	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.297	89	149	IPR017930	Myb domain
SuperFamily	SSF46689	2.69E-14	91	147	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.2E-23	93	148	IPR006447	Myb domain, plants
Pfam	PF00249	3.6E-9	94	145	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MAERIEISDD NRSDGSEIQT KTSSLLCFPG HLSFDLNQKA MDEEDSSTTG VPENEVKEDE 60 TSTDANYSNS SNNTTVEGKE RTTVRQYIRS KMPRLRWTPD LHLAFVNAVE RLGGQERATP 120 KLVLQLMNVR GLSIAHVKSH LQMYRSKKLD DSGQVLSHTS RPMYVRDHIL EMYQRASPYG 180 HFRMENRSHF FSPVLRQKFD PKASSSRSLN YNSSDEKPKR TCLANVLDIF LTDDLFHKNE 240 GLTIVASSLF VMQNGCMFLK AENTEAKYTI CGKTDTV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-19	94	148	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-19	94	148	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-19	94	148	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-19	94	148	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-19	94	148	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-19	94	148	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-19	94	148	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-19	94	148	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-19	94	148	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-19	94	148	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-19	94	148	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-19	94	148	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM464316	0.0	AM464316.2 Vitis vinifera contig VV78X206152.13, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010657046.1	1e-150	PREDICTED: uncharacterized protein LOC104880828
TrEMBL	F6H504	1e-175	F6H504_VITVI; Uncharacterized protein
STRING	VIT_12s0028g02080.t01	1e-175	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP285	15	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	9e-43	G2-like family protein

Link Out ? help Back to Top
Phytozome	GSVIVT01020718001