PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01020781001
Common NameVIT_12s0028g01410
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family HSF
Protein Properties Length: 349aa    MW: 39885.4 Da    PI: 6.3824
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01020781001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind102.34.3e-321849101
                        HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXX CS
       HSF_DNA-bind   9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrk 100
                        +++d+ +++++sws+ g+sfvv+++ efak++LpkyFkh+nf+SFvRQLn+YgF+k + e+         weF++++F +g+++ll++i+r+
  GSVIVT01020781001   1 MVDDPITDSIVSWSQAGHSFVVWNPPEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKADPEQ---------WEFANEEFIRGQRHLLKNIHRR 83 
                        8999****************************************************99988.........*********************9 PP

                        X CS
       HSF_DNA-bind 101 k 101
                        k
  GSVIVT01020781001  84 K 84 
                        8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.4E-51183IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.35E-30183IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.0E-34183IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.8E-28183IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.9E-103244IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.9E-104557IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009733Biological Processresponse to auxin
GO:0009958Biological Processpositive gravitropism
GO:0048527Biological Processlateral root development
GO:0048530Biological Processfruit morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MVDDPITDSI VSWSQAGHSF VVWNPPEFAK DLLPKYFKHN NFSSFVRQLN TYGFRKADPE  60
QWEFANEEFI RGQRHLLKNI HRRKPIHSHS TQNQVGSAPL PESEKQEFEA EIERLKHDKG  120
ALLSELQRYK QENQFFEFQT QSLGKRVFNM ELRQRKMMAY LAQVLQKPGF TSSLMAQSEI  180
HNKKRRLLMP NYLFNEANNV EMIESLESSL NFWENFLYGI GQGSADLARA TNHADSPAIS  240
SIYLNIDGCP KSLRIDVNSE PTNASEVEAS KECEGGTTAA GANDVFWAQF LTETPGSSDA  300
QEVQSERRDA YGGKGDSKPD DHRKYWWDTN NLDHLTKKMG HLTSSERT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-2318327120Heat shock factor protein 1
5d5u_B4e-2318336129Heat shock factor protein 1
5d5v_B4e-2318336129Heat shock factor protein 1
5d5v_D4e-2318336129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.50890.0cell culture| flower| fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4314670.0AM431467.2 Vitis vinifera contig VV78X068286.4, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278037.10.0PREDICTED: heat stress transcription factor A-4b
SwissprotQ94J161e-106HFA4B_ORYSJ; Heat stress transcription factor A-4b
TrEMBLF6H5510.0F6H551_VITVI; Uncharacterized protein
STRINGVIT_12s0028g01410.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP52351020
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.11e-100HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Shim D, et al.
    Orthologs of the class A4 heat shock transcription factor HsfA4a confer cadmium tolerance in wheat and rice.
    Plant Cell, 2009. 21(12): p. 4031-43
    [PMID:20028842]
  3. Guan JC, et al.
    A 9 bp cis-element in the promoters of class I small heat shock protein genes on chromosome 3 in rice mediates L-azetidine-2-carboxylic acid and heat shock responses.
    J. Exp. Bot., 2010. 61(15): p. 4249-61
    [PMID:20643810]