PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01020827001
Common NameVITISV_032969
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family G2-like
Protein Properties Length: 238aa    MW: 27580.1 Da    PI: 8.6392
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01020827001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.59.8e-311871255
            G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                       prlrWtpeLH++Fve+ve+LGG+ +AtPk+il++m+vkgL ++hvkSHLQ+YR 
  GSVIVT01020827001 18 PRLRWTPELHDHFVEVVERLGGKYRATPKRILQMMSVKGLKISHVKSHLQMYRN 71
                       8****************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-271572IPR009057Homeodomain-like
TIGRFAMsTIGR015579.4E-231872IPR006447Myb domain, plants
SuperFamilySSF466891.77E-141871IPR009057Homeodomain-like
PfamPF002496.8E-91970IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MKNSQRTGVR QYNKSEFPRL RWTPELHDHF VEVVERLGGK YRATPKRILQ MMSVKGLKIS  60
HVKSHLQMYR NMKGCSNINI LVPMKHLCEE RANFNANGFF PISSSQRLTA RNELREWELD  120
RRGFEPNVFH EESDGLQIME ETGDYEQQDT QTSLLSGTSK EEDVGPKEIC ELSLSFATSP  180
LMRSKKDQES WPLNNIDHTR HSNATARKFI NIPHFQSLRE NRLNLDLTIS TCFSHSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-181973458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-181973458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A8e-181973357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-181973357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-181973357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-181973357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-181973458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-181973458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-181973458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-181973458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-181973458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-181973458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4815881e-148AM481588.1 Vitis vinifera contig VV78X138380.7, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010657107.11e-179PREDICTED: protein PHOSPHATE STARVATION RESPONSE 1
TrEMBLA5C4421e-178A5C442_VITVI; Uncharacterized protein
STRINGXP_006485154.12e-64(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP28515123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.13e-27G2-like family protein