PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01021085001

Common Name

LOC100246919, VIT_10s0003g00030

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

Dof

Protein Properties

Length: 300aa MW: 32668 Da PI: 9.3686

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01021085001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.8	2.4e-38	33	90	4	61
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +kcprCds ntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rk k++ GSVIVT01021085001 33 LPQKCPRCDSINTKFCYYNNYSLSQPRYFCKTCRRYWTQGGTLRNVPVGGGCRKTKRK 90 5689***************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-25	31	89	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.7E-33	35	89	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.947	35	89	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	37	73	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MQQDRDKGGG LEDVDPPDRR LKPAQSENQQ QQLPQKCPRC DSINTKFCYY NNYSLSQPRY 60 FCKTCRRYWT QGGTLRNVPV GGGCRKTKRK PSASGDNSRS QLPTQQQQQN LAAPPPNIIS 120 TNSGVAVGPA LRIAEPANLS PAPAPASAPT LSSVNPYYPA GAFLSSLPAM RPLNQPQPQP 180 FNQPVNVGRD FGGSNLAILQ GFNVPSLGSQ QQQRQQAEFY QMGNRDRNIE SLYGSGEDLI 240 QSSRPTGHQN NWHQTFINPT APDSNLWSIG GSSNNNSNAA SSSFNQNHWA DLQGYGPPP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM431127	0.0	AM431127.2 Vitis vinifera contig VV78X089476.28, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002274050.1	0.0	PREDICTED: dof zinc finger protein DOF5.7
Refseq	XP_019077995.1	0.0	PREDICTED: dof zinc finger protein DOF5.7
TrEMBL	A0A438DR47	0.0	A0A438DR47_VITVI; Dof zinc finger protein DOF5.3
TrEMBL	D7TJB7	0.0	D7TJB7_VITVI; Uncharacterized protein
STRING	VIT_10s0003g00030.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	3e-34	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	GSVIVT01021085001
Entrez Gene	100246919