PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01021098001
Common NameVIT_10s0003g00140
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 228aa    MW: 24589.4 Da    PI: 10.03
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01021098001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643.1e-202070256
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                       +++GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAaka++ a+++++g+
  GSVIVT01021098001 20 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAAKAYDSAAREFRGA 70
                       69*******.**********8...557*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.05E-212078IPR016177DNA-binding domain
PROSITE profilePS5103223.5252077IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-322078IPR001471AP2/ERF domain
CDDcd000183.08E-302077No hitNo description
SMARTSM003801.3E-382083IPR001471AP2/ERF domain
PfamPF008471.1E-132069IPR001471AP2/ERF domain
PRINTSPR003677.7E-112132IPR001471AP2/ERF domain
PRINTSPR003677.7E-114359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016604Cellular Componentnuclear body
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAPKEKVAGV KPSANAKEVH FRGVRKRPWG RYAAEIRDPG KKSRVWLGTF DTAEEAAKAY  60
DSAAREFRGA KAKTNFPLVS ENLNNNNQSP SQSSTVESSS REGFSPALMV DSSPLDLNLL  120
HGGGVGHHQF QVSSPSPAAG IVPTGGLPAA NHLFYFDAML RTGRVNQDFQ RLRFDRAASD  180
FRAALTGGVQ SDSDSSSVVD LNHNDLKPRA RVLIDLDLNR PPPPEIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-221678164ATERF1
3gcc_A4e-221678164ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.5810.0bud| flower| fruit| inflorescence| pedicel| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, mostly in root tip, lateral root tips, cortex and vascular tissues. {ECO:0000269|PubMed:10945353}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00358DAPTransfer from AT3G15210Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3957440.0AY395744.1 Vitis aestivalis putative ethylene response factor ERF3a mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002279692.11e-137PREDICTED: ethylene-responsive transcription factor 4
SwissprotQ9LW492e-45ERF4_NICSY; Ethylene-responsive transcription factor 4
TrEMBLD7TJC71e-164D7TJC7_VITVI; Uncharacterized protein
STRINGVIT_10s0003g00140.t011e-165(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.12e-27erf domain protein 9