PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01021113001

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

HB-other

Protein Properties

Length: 1683aa MW: 189266 Da PI: 5.9831

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01021113001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.2	1.2e-17	3	52	8	57
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+ ql++Le++++ ++yp++++r+eL++klgL++rq ++WF+ rR k+kk GSVIVT01021113001 3 TPFQLQTLERAYALEPYPTEASRAELSEKLGLSDRQLQMWFCHRRLKDKK 52 889*********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.115	1	53	IPR001356	Homeobox domain
SMART	SM00389	1.3E-12	1	57	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.63E-14	2	53	IPR009057	Homeodomain-like
CDD	cd00086	8.14E-14	2	53	No hit	No description
Pfam	PF00046	3.0E-15	3	52	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.4E-16	3	52	IPR009057	Homeodomain-like
SMART	SM00571	9.5E-21	509	568	IPR018501	DDT domain
PROSITE profile	PS50827	16.083	509	568	IPR018501	DDT domain
Pfam	PF02791	2.0E-16	510	565	IPR018501	DDT domain
Pfam	PF05066	2.6E-11	691	758	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	5.7E-10	894	938	IPR028942	WHIM1 domain
Pfam	PF15613	6.7E-14	1076	1148	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1683 aa Download sequence Send to blast
MKTPFQLQTL ERAYALEPYP TEASRAELSE KLGLSDRQLQ MWFCHRRLKD KKEGQAKEAA 60 SKKPRNAVAE EFEDEARSEH GSHSGSGSLS GSSPLGYGQL PQVLSGNMGP MGRRSYESPQ 120 SIFELRVIAS VEAQLGEPLR DDGPILGMEF DPLPPDAFGA PIAIVEHQKQ SAYCYEEKVY 180 EHRDAKSKKA AARAFHDHPF HQDKSSTRPD AYGRVGPSHF YDRPIDGPSS ETSAFLHRTE 240 PSSREYGEQG YVSHARVLSQ QDKQERILSS PGDYDSVPRS DSFMNSGKDA QFSGHSIGPE 300 NSYVLSDRQI THNGDVLRMD RKRKGEEARI TTDAEAHEKR IRKELEKQDI LRRKREEQIR 360 KEMERHDRER RKEEERLMRE RQREVERLQR EQRREIERRE KFLQKESLRA EKRRQKEELR 420 REKEAVRLKA SIEKATARRI ARESMELIED DRLELMELAA ASKGLPSIVS LDHDTLQNLE 480 SFRDLLSVFP PTSVQLRRPF AVQPWDDSEE NIGNLLMVWR FLITFADVLQ LWPFTLDEFV 540 QAFHDYDSRL MGEIHIALVK LIIKDIEDVA RTPSLGLGTN QNTAAGPEGG HPHIVEGAYA 600 WGFDIRNWQR HLNPLTWPEI LRQFALSAGF GPQLKKRSSE WSYSRENNEI KGCEDIVSTL 660 RNGSAAVNAV AIMKGKGFSL SRRSRHRLTP GTVKFAVFHV LSLEGSKGLT ILELADKIQK 720 SGLRDLTRSK APEASISAAL SRDAALFERT APCTYCVRPT FRKDPADAEK VLSAAREKVH 780 VFENGFLAGE DVDDVERDDD SECDVAEGPE VDDLGTPSNA NKNTIHLNNG GSTCSGNGKE 840 NACNDVINPQ NEVVKDFSSP LSSGTKVTTT ASITLNQYGA GNPDQENVEI DESNSGEPWV 900 QGLAEGEYSD LSVEERLNAL VALIGVANEG NTIRAVLEDR LEAAIALKKQ MWAEAQLDKK 960 RLKEENITKV QYTSCIASKA DMKPTSAAAE GSQSPLPVDN KNNEASLNTA VGQKPSVSSH 1020 NVQNHLSTLP TEGTSIVQES TVPNNFISQH GYDAERSRLQ LKSYIAHRAE DVYVYRSLPL 1080 GQDRRRNRYW QFVASASRND PGSGRIFVEL HDGYWRLINS EEAFDALITS LDTRGIRESH 1140 LHAMLQKIEM AFKENVRRNS HTVCGLVSDA LEPLSSFGIE LGRNEMEKRA TLKRYQDFQK 1200 WMWKECFNSE ALCSMKYGKK RCAQLLSICD FCFECYFNED NHCPSCHRTF GSFDNNVHFL 1260 EHVIQCENKK KTNPEDLHIS DSSLPLGIRL LKALLAFIEV SIPLDALESF WMEGYQRETW 1320 GMKIQTSSSI EDLLQIVTLL EGVIKQDRLS TEFRTTKELL GSCTSSGNAV YDSAYTGSVP 1380 VLAWIPQTTA AVAVRLLELD ASISYIHHDK SQCHDDKKEL GEFRKFPSRY APVKNAQEVE 1440 ISGFPQDIHK KEENWTDLGN GRDSSRHGQR GRGRGRGRLH GEKWQRRVSS SRPHTGKHNA 1500 RDNPNLNQRR GLQDRRTREQ ESQGQGCRRG PRTVRRRADK RAVKGTPLGH LGDMVRPKGK 1560 GESHRNLIGE GWGKFTMMQM DNADNHSSGD TVESDDNAPE MEHEHGSWGL GFDGVSGGQT 1620 GDLMEVSDED AEGSEDDNGS EEEGDDDNSE DANMNECSDG LVNGVGNEDL GTEYATSEDY 1680 SD*

Sequence ? help Back to Top

Protein Sequence Length: 1683 aa Download sequence Send to blast

MKTPFQLQTL ERAYALEPYP TEASRAELSE KLGLSDRQLQ MWFCHRRLKD KKEGQAKEAA  60
SKKPRNAVAE EFEDEARSEH GSHSGSGSLS GSSPLGYGQL PQVLSGNMGP MGRRSYESPQ  120
SIFELRVIAS VEAQLGEPLR DDGPILGMEF DPLPPDAFGA PIAIVEHQKQ SAYCYEEKVY  180
EHRDAKSKKA AARAFHDHPF HQDKSSTRPD AYGRVGPSHF YDRPIDGPSS ETSAFLHRTE  240
PSSREYGEQG YVSHARVLSQ QDKQERILSS PGDYDSVPRS DSFMNSGKDA QFSGHSIGPE  300
NSYVLSDRQI THNGDVLRMD RKRKGEEARI TTDAEAHEKR IRKELEKQDI LRRKREEQIR  360
KEMERHDRER RKEEERLMRE RQREVERLQR EQRREIERRE KFLQKESLRA EKRRQKEELR  420
REKEAVRLKA SIEKATARRI ARESMELIED DRLELMELAA ASKGLPSIVS LDHDTLQNLE  480
SFRDLLSVFP PTSVQLRRPF AVQPWDDSEE NIGNLLMVWR FLITFADVLQ LWPFTLDEFV  540
QAFHDYDSRL MGEIHIALVK LIIKDIEDVA RTPSLGLGTN QNTAAGPEGG HPHIVEGAYA  600
WGFDIRNWQR HLNPLTWPEI LRQFALSAGF GPQLKKRSSE WSYSRENNEI KGCEDIVSTL  660
RNGSAAVNAV AIMKGKGFSL SRRSRHRLTP GTVKFAVFHV LSLEGSKGLT ILELADKIQK  720
SGLRDLTRSK APEASISAAL SRDAALFERT APCTYCVRPT FRKDPADAEK VLSAAREKVH  780
VFENGFLAGE DVDDVERDDD SECDVAEGPE VDDLGTPSNA NKNTIHLNNG GSTCSGNGKE  840
NACNDVINPQ NEVVKDFSSP LSSGTKVTTT ASITLNQYGA GNPDQENVEI DESNSGEPWV  900
QGLAEGEYSD LSVEERLNAL VALIGVANEG NTIRAVLEDR LEAAIALKKQ MWAEAQLDKK  960
RLKEENITKV QYTSCIASKA DMKPTSAAAE GSQSPLPVDN KNNEASLNTA VGQKPSVSSH  1020
NVQNHLSTLP TEGTSIVQES TVPNNFISQH GYDAERSRLQ LKSYIAHRAE DVYVYRSLPL  1080
GQDRRRNRYW QFVASASRND PGSGRIFVEL HDGYWRLINS EEAFDALITS LDTRGIRESH  1140
LHAMLQKIEM AFKENVRRNS HTVCGLVSDA LEPLSSFGIE LGRNEMEKRA TLKRYQDFQK  1200
WMWKECFNSE ALCSMKYGKK RCAQLLSICD FCFECYFNED NHCPSCHRTF GSFDNNVHFL  1260
EHVIQCENKK KTNPEDLHIS DSSLPLGIRL LKALLAFIEV SIPLDALESF WMEGYQRETW  1320
GMKIQTSSSI EDLLQIVTLL EGVIKQDRLS TEFRTTKELL GSCTSSGNAV YDSAYTGSVP  1380
VLAWIPQTTA AVAVRLLELD ASISYIHHDK SQCHDDKKEL GEFRKFPSRY APVKNAQEVE  1440
ISGFPQDIHK KEENWTDLGN GRDSSRHGQR GRGRGRGRLH GEKWQRRVSS SRPHTGKHNA  1500
RDNPNLNQRR GLQDRRTREQ ESQGQGCRRG PRTVRRRADK RAVKGTPLGH LGDMVRPKGK  1560
GESHRNLIGE GWGKFTMMQM DNADNHSSGD TVESDDNAPE MEHEHGSWGL GFDGVSGGQT  1620
GDLMEVSDED AEGSEDDNGS EEEGDDDNSE DANMNECSDG LVNGVGNEDL GTEYATSEDY  1680
SD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	45	52	RRLKDKKE

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.5641	0.0	bud\| fruit

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269\|PubMed:22694359}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM450850	0.0	AM450850.2 Vitis vinifera contig VV78X157592.9, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002273559.3	0.0	PREDICTED: homeobox-DDT domain protein RLT1 isoform X2
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	A5B911	0.0	A5B911_VITVI; Uncharacterized protein
STRING	VIT_10s0003g00270.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1577	16	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1

Link Out ? help Back to Top
Phytozome	GSVIVT01021113001