PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01021269001
Common NameVIT_10s0003g01770
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family HSF
Protein Properties Length: 355aa    MW: 41054.6 Da    PI: 6.1584
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01021269001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.62.6e-35141052102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+ye+++d+++++++sws++++sf+v+++e+f++++Lp++Fkh+nf+SF+RQLn+YgF+k+++e+         w F+++ F +g+ +l
  GSVIVT01021269001  14 FLTKTYEMVDDPTTDSIVSWSQTNKSFIVWNPEDFSRDLLPRFFKHNNFSSFIRQLNTYGFRKIDSEQ---------WAFANEDFIRGQPHL 96 
                        9***************************************************************9998.........*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l++i+r+k 
  GSVIVT01021269001  97 LRNIHRRKP 105
                        ******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.18E-359103IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.8E-3910103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.9E-6210103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.4E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.5E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.4E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.4E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009733Biological Processresponse to auxin
GO:0009958Biological Processpositive gravitropism
GO:0048527Biological Processlateral root development
GO:0048530Biological Processfruit morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MDESPGSSNS PPPFLTKTYE MVDDPTTDSI VSWSQTNKSF IVWNPEDFSR DLLPRFFKHN  60
NFSSFIRQLN TYGFRKIDSE QWAFANEDFI RGQPHLLRNI HRRKPVHSHS IQNQKGQGTS  120
CPLSESDREG YRADIERLKH DKGALLLELQ RHKEDRQGLE LQMQHLKDRL QHMEQRQQTV  180
ISYLARMLQK PGLALSFLPS METHNRKRRL LTSNCFYDES DVEENRIATS HTVNTEKLDA  240
TSVLELVEFL ESSLSSWEDI LDEFRPTSGT LIHPWKQVVG AASPVPTGVN DVFWEQFFTE  300
NPDSSAEEVQ LERKDDESRK NEGKHGDHGR FWWNARSANK LADQMGQLTP AERT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-23410317129Heat shock factor protein 1
5d5v_B2e-23410317129Heat shock factor protein 1
5d5v_D2e-23410317129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.19510.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings and at lower levels in leaves. {ECO:0000269|PubMed:18381353}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). May be involved in general response to auxin. {ECO:0000269|PubMed:18381353}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat and cold stresses and the herbicide 2,4-dichlorophenoxyacetic acid (2,4-D, auxin analog). {ECO:0000269|PubMed:18381353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR8698140.0KR869814.1 Vitis pseudoreticulata transcription factor HsfA4a mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010655551.10.0PREDICTED: heat stress transcription factor A-4a
RefseqXP_010655552.10.0PREDICTED: heat stress transcription factor A-4a
RefseqXP_010655553.10.0PREDICTED: heat stress transcription factor A-4a
SwissprotQ9FK721e-101HFA4C_ARATH; Heat stress transcription factor A-4c
TrEMBLF6HMC30.0F6HMC3_VITVI; Uncharacterized protein
STRINGVIT_10s0003g01770.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP52351020
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.11e-99HSF family protein
Publications ? help Back to Top
  1. Faragó D,Sass L,Valkai I,Andrási N,Szabados L
    PlantSize Offers an Affordable, Non-destructive Method to Measure Plant Size and Color in Vitro.
    Front Plant Sci, 2018. 9: p. 219
    [PMID:29520290]