PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01021534001
Common NameVIT_10s0003g03970
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family M-type_MADS
Protein Properties Length: 217aa    MW: 24001.4 Da    PI: 6.5169
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01021534001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.98.7e-211556142
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                       k+ie ks  +vtfskRr+g++KKA EL+vLC+ae+avi+fs+
  GSVIVT01021534001 15 KKIEKKSSLEVTFSKRRTGLFKKAGELCVLCGAEAAVIVFSP 56
                       689**************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.628767IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-31766IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.55E-27780IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-18929IPR002100Transcription factor, MADS-box
PfamPF003198.4E-221663IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-182944IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-184465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MVKKQSMGRQ KIEIKKIEKK SSLEVTFSKR RTGLFKKAGE LCVLCGAEAA VIVFSPGRRA  60
FVFGHPSADA VIDRFLHRET NSRALVPAGQ VHGHVQRQYL EALGRLEVKK EQEETVGGDG  120
EGGFWWDAPI ENMGLNELEQ FRGSLEELRK KVADRVEEMT MMMMMESGPS STAMVEYAAP  180
PQEYNSSGGV LHGHDLAAQG VPHGFDFGFG FDEHLF*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the syncytial endosperm development. {ECO:0000269|PubMed:18334668}.
UniprotTISSUE SPECIFICITY: Expressed in the endosperm but not in the embryo. Detected in young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:18334668}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4800660.0AM480066.2 Vitis vinifera contig VV78X158115.6, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002271718.31e-159PREDICTED: agamous-like MADS-box protein AGL62
SwissprotQ9FKK27e-42AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A438HZU61e-153A0A438HZU6_VITVI; Agamous-like MADS-box protein AGL62
TrEMBLF6HLT91e-153F6HLT9_VITVI; Uncharacterized protein
STRINGVIT_10s0003g03970.t011e-154(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-40AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]