PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01021622001

Common Name

LOC100249692, VIT_10s0003g04650

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

NF-YA

Protein Properties

Length: 209aa MW: 22647.9 Da PI: 7.867

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01021622001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	105.2	5.5e-33	113	169	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+e+k+ ksrkpylheSRh hAlrR+Rg+gGrF GSVIVT01021622001 113 EEPVFVNAKQYHGILRRRQSRAKAESENKV-VKSRKPYLHESRHLHALRRARGCGGRF 169 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	5.9E-37	111	172	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.986	112	172	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	5.5E-28	114	169	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.1E-23	115	137	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	117	137	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	2.1E-23	146	169	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MTSSVHDLSD NSEADEPQKH SELQVQSSSP AAGASHPGSA AANIPYATPP QLGAGHAMAQ 60 AAYPYPDPYY RSIFAPYDAQ PYPAQHYSGQ PMVHLQLMGI QQAGVPLPSD AVEEPVFVNA 120 KQYHGILRRR QSRAKAESEN KVVKSRKPYL HESRHLHALR RARGCGGRFL NSKKNESEQN 180 EVASGDKSQS NINLNSDKNE LASSDSTS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	5e-22	112	177	1	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.6356	0.0	bud\| flower\| fruit\| inflorescence

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM472177	4e-94	AM472177.2 Vitis vinifera contig VV78X243821.10, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010655736.1	1e-152	PREDICTED: nuclear transcription factor Y subunit A-7
Swissprot	Q84JP1	1e-72	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	D7TKH6	1e-150	D7TKH6_VITVI; Uncharacterized protein
STRING	VIT_10s0003g04650.t01	1e-151	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP680	16	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	1e-60	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	GSVIVT01021622001
Entrez Gene	100249692

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]