PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01021627001
Common NameLOC100854662, VIT_10s0003g04710
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family BES1
Protein Properties Length: 182aa    MW: 18980.2 Da    PI: 9.4257
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01021627001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822110.52.8e-3425125296
             DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssas..... 87 
                        ++ + ++  ++E++k RER+RR i++ i+ GLR++G+y+l  raD+neVl+ L+ eAGw+v++DGttyr++  p    a+  ++ a      
  GSVIVT01021627001  25 SGEKVRSVSDKEKTKMRERQRRSITTNIFHGLRKHGGYPLSPRADINEVLRHLASEAGWIVDPDGTTYRHSPTPSsGFASCPVCGAGkrsta 116
                        678899999************************************************************99999873333333222200000 PP

             DUF822  88 aspesslqs 96 
                         +p+ss+ +
  GSVIVT01021627001 117 STPTSSVVL 125
                        333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.9E-3226137IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MKDATAAAAM TSSGRGGGGG SGSGSGEKVR SVSDKEKTKM RERQRRSITT NIFHGLRKHG  60
GYPLSPRADI NEVLRHLASE AGWIVDPDGT TYRHSPTPSS GFASCPVCGA GKRSTASTPT  120
SSVVLGGECS TTTSPRRFQV GDSVLSPYLA GCGGSGVGDV VTSERDIPLA LYMYEKQYYI  180
I*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4845891e-155AM484589.2 Vitis vinifera contig VV78X276804.4, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003632998.21e-123PREDICTED: protein BZR1 homolog 3
TrEMBLF6HLX31e-122F6HLX3_VITVI; Uncharacterized protein
STRINGVIT_10s0003g04710.t011e-123(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10087811
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.18e-21beta-amylase 7