PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01021787001
Common NameLOC100262267, VIT_14s0030g02230
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 262aa    MW: 27990.9 Da    PI: 7.7142
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01021787001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.72.7e-10110154554
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        h+++Er RR+ri +++  L+el+P+a      K + a++L + v+Y+k L
  GSVIVT01021787001 110 HSIAERLRRERIAERMKALQELVPSA-----NKTDRAAMLDEIVDYVKFL 154
                        99***********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.34E-11103159No hitNo description
SuperFamilySSF474593.93E-15103164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.158105154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-15107165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.5E-8110154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-11111160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MGMPLGLNLE HGFLKARDQS GATNNAAAAA SSSCGITERE SVHLTNLFPA FGQLQPQSLR  60
PSPPAPAPPP PHLPQPFHGQ PTSSAVAAQP HPPAIRPRVR ARRGQATDPH SIAERLRRER  120
IAERMKALQE LVPSANKTDR AAMLDEIVDY VKFLRLQVKV LSMSRLGGAG AVAQLVADVP  180
LLSIEGDGTE GGSNQQAWEK WSTDGTEQQV AKLMEEDVGA AMQFLQSKAL CIMPISLASA  240
IFRTHQPEPS TLVKPESDAP S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114119RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.93111e-176bud| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4558651e-127AM455865.2 Vitis vinifera contig VV78X059970.4, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010659880.10.0PREDICTED: transcription factor UNE12
SwissprotO227687e-81UNE12_ARATH; Transcription factor UNE12
TrEMBLF6HTR00.0F6HTR0_VITVI; Uncharacterized protein
STRINGVIT_14s0030g02230.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.31e-59bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]