PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01022076001
Common NameLOC100233129, VIT_07s0031g00190
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 153aa    MW: 17059 Da    PI: 8.6159
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01022076001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.2e-172473255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       +ykG+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a   l+g
  GSVIVT01022076001 24 RYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVFHLRG 73
                       8******99.**********9...336**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.26E-272382No hitNo description
PROSITE profilePS5103222.4052481IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-302482IPR001471AP2/ERF domain
SMARTSM003807.4E-372487IPR001471AP2/ERF domain
PfamPF008471.4E-102473IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-212482IPR016177DNA-binding domain
PRINTSPR003672.0E-112536IPR001471AP2/ERF domain
PRINTSPR003672.0E-116383IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MEGGQECCSS RETRKRVTGQ GEKRYKGIRM RKWGKWVAEI REPNKRSRIW LGSYSTPVAA  60
ARAYDTAVFH LRGPSARLNF PEYLVGEGGL HDTSAASIRK KATEVGATVD AIECARTASN  120
QYKSCAFSEK PDLNKEPDPE NSDVDDDHHY HL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-161688680Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.157720.0fruit
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00276DAPTransfer from AT2G23340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0971820.0DQ097182.2 Vitis vinifera drought responsive element binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001268123.11e-112drought responsive element binding protein
SwissprotO221743e-51ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLA0A438KQR41e-110A0A438KQR4_VITVI; Ethylene-responsive transcription factor ERF008
TrEMBLA6XA901e-110A6XA90_VITVI; Drought responsive element binding protein
STRINGVIT_07s0031g00190.t011e-111(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.11e-53DREB and EAR motif protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Saumonneau A, et al.
    Interaction of grape ASR proteins with a DREB transcription factor in the nucleus.
    FEBS Lett., 2008. 582(23-24): p. 3281-7
    [PMID:18804467]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]