PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01022109001
Common NameVIT_07s0031g00420
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 97aa    MW: 11249.2 Da    PI: 11.105
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01022109001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.64.2e-101548945
                AP2  9 dkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAaka 45
                       ++ +g+Wv+eI++p        +r++lg+f t e+Aa+a
  GSVIVT01022109001 15 HRHWGSWVCEIHHP-----LlkTRIWLGTFETTEDAARA 48
                       678**********8.....334***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.719748IPR001471AP2/ERF domain
CDDcd000181.32E-14955No hitNo description
PfamPF008471.0E-41548IPR001471AP2/ERF domain
SMARTSM003807.6E-51568IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-91551IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-161549IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MVLKNGLDRP VQQAHRHWGS WVCEIHHPLL KTRIWLGTFE TTEDAARAMT RRRGSCVVRG  60
REPTSLTIRT PPCYRLPSFF QLLELPFLFK KLTFSI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.18352e-81bud| cell culture| flower| fruit| inflorescence| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4453891e-88AM445389.2 Vitis vinifera contig VV78X118204.11, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020083294.11e-14ethylene-responsive transcription factor ERF003-like
TrEMBLD7SVV97e-65D7SVV9_VITVI; Uncharacterized protein
STRINGVIT_07s0031g00420.t011e-65(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.13e-17ERF family protein