PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01022134001
Common NameLOC100247320, VIT_07s0031g00670
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family HSF
Protein Properties Length: 287aa    MW: 31786.2 Da    PI: 4.9237
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01022134001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind119.51.9e-37101022103
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+y++++d++++++iswse+gn+fvv+++ +fak++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF++++Fk+g++el
  GSVIVT01022134001  10 FLTKTYQLVDDPSTDDVISWSESGNTFVVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDK---------WEFANEYFKRGQREL 92 
                        9****************************************************************999.........*************** PP

                        XXXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkkse 103
                        +++i+r+k++
  GSVIVT01022134001  93 MSEIRRRKTT 102
                        *******976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004157.3E-63699IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.9E-34799IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.3E-39799IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.2E-321099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.9E-221033IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.9E-224860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.9E-226173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MAQRSVPAPF LTKTYQLVDD PSTDDVISWS ESGNTFVVWK TADFAKDLLP NYFKHNNFSS  60
FVRQLNTYGF RKIVPDKWEF ANEYFKRGQR ELMSEIRRRK TTTSSTAQAL PGGKSAGGGT  120
SSPTNSGEDL GSTSTSSPDS KNPGSVETTT TAQFADLSDE NEKLKKDNES LSTELAQTKR  180
QCEELIAFLT EYVKVAPDQI NRIMKQESCG SGHGGLVGEI GGSVDDDDDD EKDEDPNEES  240
LKLFGVWLKG KKKRGREEKM GYGGPHQKEM KTVDFEAPWM TSKVCN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-29510416125Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111118GGKSAGGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.73060.0bud| cell culture| fruit| leaf| root
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4716080.0AM471608.2 Vitis vinifera contig VV78X258796.7, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002277765.20.0PREDICTED: heat shock factor protein HSF24
SwissprotP223351e-119HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A438KJJ40.0A0A438KJJ4_VITVI; Heat shock factor protein HSF24
TrEMBLD7SVY00.0D7SVY0_VITVI; Uncharacterized protein
STRINGVIT_07s0031g00670.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.11e-91heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]