PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01022264001

Common Name

VITISV_026075

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

C3H

Protein Properties

Length: 127aa MW: 13851.6 Da PI: 8.6536

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01022264001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.1	1.1e-11	9	29	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 C+ fa tGtC+yG+rC+F+H GSVIVT01022264001 9 VCKQFAVTGTCPYGPRCRFSH 29 6******************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.774	4	32	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	7.7E-6	4	31	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.83E-8	4	31	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.5E-8	9	32	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.3E-9	9	29	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
MRTRPEGNVC KQFAVTGTCP YGPRCRFSHQ IQSLLSTTQQ TPSPSRPQHT AATTPTIKTA 60 TPTKTTADWS PMDDGIEVVL PGSSAEKPAS RDEVNTYINS FLYGPTTPRR RLPVFEEICP 120 SREATP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM443893	0.0	AM443893.2 Vitis vinifera contig VV78X144361.4, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010652879.1	2e-88	PREDICTED: mRNA decay activator protein ZFP36
Refseq	XP_019076491.1	2e-88	PREDICTED: mRNA decay activator protein ZFP36
Refseq	XP_019076492.1	2e-88	PREDICTED: mRNA decay activator protein ZFP36
Refseq	XP_019076493.1	2e-88	PREDICTED: mRNA decay activator protein ZFP36
TrEMBL	A0A438F5H2	4e-87	A0A438F5H2_VITVI; mRNA decay activator protein ZFP36L2-A
TrEMBL	D7SW89	4e-87	D7SW89_VITVI; Uncharacterized protein
STRING	VIT_07s0031g01870.t01	7e-88	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP12121	4	4

Link Out ? help Back to Top
Phytozome	GSVIVT01022264001