PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01022645001

Common Name

LOC100253346, VIT_02s0033g00300

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

G2-like

Protein Properties

Length: 262aa MW: 29521.4 Da PI: 9.8841

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01022645001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105	4.5e-33	16	70	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prlrWtp+LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl GSVIVT01022645001 16 RPRLRWTPDLHDRFVDAVTKLGGPHKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 70 59****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-31	13	71	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.927	13	73	IPR017930	Myb domain
SuperFamily	SSF46689	6.27E-16	16	73	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.9E-24	17	71	IPR006447	Myb domain, plants
Pfam	PF00249	2.6E-9	18	69	IPR001005	SANT/Myb domain
Pfam	PF14379	1.7E-19	108	152	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MERGYENGVV MTRDPRPRLR WTPDLHDRFV DAVTKLGGPH KATPKSVLRL MGLKGLTLYH 60 LKSHLQKYRL GQQSRKQSIT ENSDYRTHAS GTSAKSSSRN NEQGGILIAE AVRCQVEVQK 120 QLLEQIEVQK KLQMRIEAQG KYLQAVLDKA QQSLSINVNC PGSLEAMRAQ LTNFNMALSS 180 LTENTNEEDM KVNIIEKSIP SNRANGSVFT AYREAEELVN KDVKFREGEG FRHFDLNTKG 240 NYEFAGANGA DFEAKMIAYR R*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-20	16	69	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-20	16	69	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	5e-20	16	69	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-20	16	69	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-20	16	69	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-20	16	69	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-20	16	69	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-20	16	69	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-20	16	69	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-20	16	69	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-20	16	69	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-20	16	69	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.19118	0.0	cell culture

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00544	DAP	Transfer from AT5G45580	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM424210	0.0	AM424210.2 Vitis vinifera contig VV78X075640.7, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002264257.2	0.0	PREDICTED: myb family transcription factor PHL11
Swissprot	C0SVS4	2e-71	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	D7U3R9	0.0	D7U3R9_VITVI; Uncharacterized protein
STRING	VIT_02s0033g00300.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	5e-71	G2-like family protein

Link Out ? help Back to Top
Phytozome	GSVIVT01022645001
Entrez Gene	100253346

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]