PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01022656001
Common NameVIT_02s0033g00390, VvmybA2
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 231aa    MW: 26432.3 Da    PI: 10.2287
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01022656001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.4e-17855148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEd ll ++++++G g W++++ + g++R+lk+c++rw++yl
  GSVIVT01022656001  8 KGAWTQEEDVLLRKCIEKYGEGKWHLVPLRAGLNRCLKSCRLRWLNYL 55
                       79********************************************97 PP
2Myb_DNA-binding39.51.3e-1261103145
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                        rg +  +E +l ++++++lG++ W++Ia +++ gRt++++k++w+
  GSVIVT01022656001  61 RGEFALDEVDLMIRLHNLLGNR-WSLIAGRLP-GRTANDVKNYWH 103
                        6777889999************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.888159IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-21457IPR009057Homeodomain-like
SuperFamilySSF466891.01E-275102IPR009057Homeodomain-like
SMARTSM007171.1E-14757IPR001005SANT/Myb domain
PfamPF002491.6E-15855IPR001005SANT/Myb domain
CDDcd001676.66E-101055No hitNo description
Gene3DG3DSA:1.10.10.601.6E-1958110IPR009057Homeodomain-like
PROSITE profilePS5129415.13960110IPR017930Myb domain
SMARTSM007176.2E-1060108IPR001005SANT/Myb domain
PfamPF002497.0E-1161103IPR001005SANT/Myb domain
CDDcd001671.13E-667103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MKSLGVRKGA WTQEEDVLLR KCIEKYGEGK WHLVPLRAGL NRCLKSCRLR WLNYLKPDIK  60
RGEFALDEVD LMIRLHNLLG NRWSLIAGRL PGRTANDVKN YWHGHHLKKK VQFQEEGRKK  120
PQTHSKTKAI KPHPHKFSKA LPRFELKTTA VDTFDTQVST SSKPSSTSPQ PNDDIIWWES  180
LLAEHAQMDQ ETDFSASGEM LIASLWTEET ATQKKGTHSK TKLIHVTTTE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-2081117108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.33230.0fruit
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0979240.0AB097924.1 Vitis vinifera VvmybA2 mRNA for myb-relared transcription factor VvMYBA2, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002265048.11e-155PREDICTED: LOW QUALITY PROTEIN: transcription factor MYB90
SwissprotQ9FNV93e-61MY113_ARATH; Transcription factor MYB113
TrEMBLQ6L9M81e-155Q6L9M8_VITVI; Myb-relared transcription factor VvMYBA2
STRINGVIT_02s0033g00390.t011e-156(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.16e-62myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]