PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01022664001
Common NameMybA3, MYBA3, VIT_02s0033g00450, VvmybA3
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 159aa    MW: 18535.4 Da    PI: 10.8706
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01022664001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.3e-17855148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEd ll ++++++G g W++++ + g++R++k+c++rw++yl
  GSVIVT01022664001  8 KGAWTQEEDVLLRKCIEKYGEGKWHLVPLRAGLNRCRKSCRLRWLNYL 55
                       79********************************************97 PP
2Myb_DNA-binding40.47e-1361103145
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                        rg +  +E +l ++++++lG++ W++Ia +++ gRt++++k++w+
  GSVIVT01022664001  61 RGEFALDEVDLMIRLHNLLGNR-WSLIAGRLP-GRTANDVKNYWH 103
                        677888999*************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.83159IPR017930Myb domain
SuperFamilySSF466891.2E-285102IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-22557IPR009057Homeodomain-like
SMARTSM007174.1E-15757IPR001005SANT/Myb domain
PfamPF002492.1E-16855IPR001005SANT/Myb domain
CDDcd001671.70E-101055No hitNo description
Gene3DG3DSA:1.10.10.607.4E-2058110IPR009057Homeodomain-like
PROSITE profilePS5129415.13960110IPR017930Myb domain
SMARTSM007176.2E-1060108IPR001005SANT/Myb domain
PfamPF002493.6E-1161103IPR001005SANT/Myb domain
CDDcd001675.61E-767103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MESLGVRKGA WTQEEDVLLR KCIEKYGEGK WHLVPLRAGL NRCRKSCRLR WLNYLKPDIK  60
RGEFALDEVD LMIRLHNLLG NRWSLIAGRL PGRTANDVKN YWHGHHLKKK VQFQEEGRDK  120
PQTHSKTKAI KSRKPLDRRN CNTDKGTHGW YGRTNPGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-2081117108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.124480.0fruit
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0979250.0AB097925.1 Vitis vinifera VvmybA3 mRNA for myb-related transcription factor VvMYBA3, complete cds.
GenBankFJ6875800.0FJ687580.1 Vitis vinifera Pinot Noir transcription factor MYBA3 (MybA3) mRNA, MybA3-W allele, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001268189.11e-113transcription factor MYB113-like
SwissprotQ9FNV93e-57MY113_ARATH; Transcription factor MYB113
TrEMBLQ6L9M71e-112Q6L9M7_VITVI; Myb-related transcription factor VvMYBA3
STRINGVIT_02s0033g00450.t011e-113(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.11e-59myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]