PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01023123001
Common NameVIT_12s0035g02020
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NAC
Protein Properties Length: 205aa    MW: 24138.6 Da    PI: 10.067
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01023123001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.51.5e-50381632128
                NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                        +pGfrFhPt+eelv +yL++kvegk++++ e i+++d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + 
  GSVIVT01023123001  38 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITSLDLYRYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIR 128
                        79***************************.89***************8778899************************************** PP

                NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +++ + +glkktLvfy+g+apkg +t+W+m+eyrl
  GSVIVT01023123001 129 TENFRPIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 163
                        *********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-5637183IPR003441NAC domain
PROSITE profilePS5100555.85837184IPR003441NAC domain
PfamPF023651.7E-2539163IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MTVEERSKGT AKVGVFMAIA ANMSQEDNKD EHEHDMVMPG FRFHPTEEEL VEFYLRRKVE  60
GKRFNVELIT SLDLYRYDPW ELPALAAIGE KEWFFYVPRD RKYRNGDRPN RVTTSGYWKA  120
TGADRMIRTE NFRPIGLKKT LVFYSGKAPK GIRTSWIMNE YRLPQQETER SQKAEISLCR  180
VYKRAGVEDH PSLPRSLPKW KWRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-573918419165NO APICAL MERISTEM PROTEIN
1ut4_B2e-573918419165NO APICAL MERISTEM PROTEIN
1ut7_A2e-573918419165NO APICAL MERISTEM PROTEIN
1ut7_B2e-573918419165NO APICAL MERISTEM PROTEIN
4dul_A2e-573918419165NAC domain-containing protein 19
4dul_B2e-573918419165NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.190110.0cell culture
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in aerial organs in early stages of seedling development. {ECO:0000269|PubMed:17653269}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4893531e-147AM489353.2 Vitis vinifera contig VV78X021393.26, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002271971.11e-135PREDICTED: NAC domain-containing protein 35
SwissprotQ9ZVP81e-109NAC35_ARATH; NAC domain-containing protein 35
TrEMBLF6HJY71e-144F6HJY7_VITVI; Uncharacterized protein
STRINGVIT_12s0035g02020.t011e-145(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.21e-111NAC domain containing protein 35
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Okajima K
    Molecular mechanism of phototropin light signaling.
    J. Plant Res., 2016. 129(2): p. 149-57
    [PMID:26815763]
  3. Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M
    Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii.
    J Phys Chem B, 2018. 122(6): p. 1801-1815
    [PMID:29355019]