PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01023137001

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

ZF-HD

Protein Properties

Length: 169aa MW: 18103.3 Da PI: 8.3218

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01023137001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	99.4	2.6e-31	71	126	2	58
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 ++vrY+eClkNhAa++Gg+a+DGCgEfmp geegt +al+C+AC CHRnFHR+eve GSVIVT01023137001 71 KAVRYRECLKNHAAAMGGNATDGCGEFMPG-GEEGTLEALNCSACHCHRNFHRKEVE 126 689************************9.999******************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	4.1E-28	73	125	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	8.0E-23	73	127	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.2E-29	74	125	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.207	75	124	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MELTSQEGEI PIPINSAYGG GGGHGHGHGH GHMIHHDPAP HNHIIHSSAP QIPSNGPPIP 60 STLEDHVPYK KAVRYRECLK NHAAAMGGNA TDGCGEFMPG GEEGTLEALN CSACHCHRNF 120 HRKEVEALQR KLVGKFRSKK KLWCNSSAKR LVSKDESSRS GCTTTSTT*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.19863	0.0	inflorescence

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Not detected in the meristem prior to exposure to long days (LDs), but after exposure to three LDs, stable accumulation on the flanks of the meristem adjacent to floral primordia, during floral induction. {ECO:0000269\|PubMed:22319055}.
Uniprot	TISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269\|PubMed:16428600}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269\|PubMed:22319055}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by exposure to long days. {ECO:0000269\|PubMed:22319055}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM436118	0.0	AM436118.2 Vitis vinifera contig VV78X172274.5, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003633412.1	1e-88	PREDICTED: zinc-finger homeodomain protein 4
Swissprot	Q9M9S0	5e-33	ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBL	F6HJZ6	2e-87	F6HJZ6_VITVI; Uncharacterized protein
STRING	VIT_12s0035g01880.t01	4e-88	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP91	16	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14440.2	2e-31	homeobox protein 31

Link Out ? help Back to Top
Phytozome	GSVIVT01023137001