PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01023292001
Common NameLOC100257570, VIT_12s0035g00620, VITISV_021778
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bZIP
Protein Properties Length: 375aa    MW: 41906.1 Da    PI: 8.2514
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01023292001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_126.51.4e-082392851763
                        HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1  17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                        A+rsR RK+++i+eLe+ v++L+ae ++   el+ l+++   l +e+
  GSVIVT01023292001 239 AQRSRVRKLQYIAELERNVQALKAEGSEVSAELDFLNQQNLILSMEN 285
                        89***********************************9998887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.7E-4228287IPR004827Basic-leucine zipper domain
CDDcd147036.71E-15230278No hitNo description
SuperFamilySSF579594.81E-6239281No hitNo description
Gene3DG3DSA:1.20.5.1706.2E-6239281No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MANSKGSSNF RNMISSGKHS LLPPKSPFPS ISPSYADYAP SPAIGSKVIA RPREGGNTHH  60
QRTSSEGFLI EEQPSWLDDL LNEPETPVRR GHRRSSSDSF AYMDATNVSN IDHTAQDELK  120
FRNLISATSW GSQDFEHYKD ARNASFYVEP NSFGRQKNRT SMTYSSGLPS TRDSNVLQSS  180
GSSCIPHETD GVSSTATEKQ DLVESSLHDP KASSERRDCS HAKPSASETD TKRAKQQFAQ  240
RSRVRKLQYI AELERNVQAL KAEGSEVSAE LDFLNQQNLI LSMENKALKQ RLESLAQEQL  300
IKYLEQEVLE REIGRLRSLY HQQQQQQQQP QQQQPASSHR RSSSRDLDAQ FANLSLKHKD  360
NSSGTDAVTG PLRI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.35110.0bud| cell culture| fruit| inflorescence
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3833320.0FQ383332.1 Vitis vinifera clone SS0ABG22YO21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002266061.10.0PREDICTED: uncharacterized protein At4g06598
RefseqXP_010658028.10.0PREDICTED: uncharacterized protein At4g06598
TrEMBLA5B6S20.0A5B6S2_VITVI; Uncharacterized protein
STRINGVIT_12s0035g00620.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP42521219
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58110.21e-104bZIP family protein
Publications ? help Back to Top
  1. Velasco R, et al.
    A high quality draft consensus sequence of the genome of a heterozygous grapevine variety.
    PLoS ONE, 2007. 2(12): p. e1326
    [PMID:18094749]