PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01023531001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 228aa    MW: 26075.1 Da    PI: 10.0033
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01023531001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569.2e-181461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEd++lv  ++++G g+W++ +++ g+ R++k+c++rw +yl
  GSVIVT01023531001 14 KGSWTPEEDQILVSHIQRHGHGNWRALPKEAGLMRCGKSCRLRWTNYL 61
                       799*******************************************97 PP
2Myb_DNA-binding491.4e-1567138148
                        TSSS-HHHHHHHHHHHHHTTTT.........................-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.........................tWktIartmgkgRtlkqcksrwqkyl 48 
                        rg++++eE+e +++++++lG++                          W++Ia++++ gRt++++k++w+++l
  GSVIVT01023531001  67 RGNFSKEEEETIIKLHQLLGNRrvlffqfhymntdiilinsvkktklLWSAIAARLP-GRTDNEIKNFWHSHL 138
                        89*******************************************************.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.8E-26568IPR009057Homeodomain-like
PROSITE profilePS5129422.973965IPR017930Myb domain
SMARTSM007171.6E-131363IPR001005SANT/Myb domain
PfamPF002492.2E-161461IPR001005SANT/Myb domain
SuperFamilySSF466898.53E-241589IPR009057Homeodomain-like
CDDcd001675.89E-121661No hitNo description
PROSITE profilePS5129410.5266142IPR017930Myb domain
SMARTSM007174.8E-1366140IPR001005SANT/Myb domain
PfamPF002491.9E-1367138IPR001005SANT/Myb domain
CDDcd001678.91E-969138No hitNo description
Gene3DG3DSA:1.10.10.605.3E-2369143IPR009057Homeodomain-like
SuperFamilySSF466891.15E-8101145IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MVRTPCCESM GLKKGSWTPE EDQILVSHIQ RHGHGNWRAL PKEAGLMRCG KSCRLRWTNY  60
LRPDIKRGNF SKEEEETIIK LHQLLGNRRV LFFQFHYMNT DIILINSVKK TKLLWSAIAA  120
RLPGRTDNEI KNFWHSHLKK RLKHKLATLD TIPKCKMGDA RRSKTANMPM DPRIESPGHA  180
PILPTQLLSA TTAGSALEAD SINGSSANSC NVNDDLDKIL FYYYYYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-221214225128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4521871e-171AM452187.2 Vitis vinifera contig VV78X068453.6, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010660228.11e-136PREDICTED: myb-related protein Myb4
SwissprotQ7XBH42e-68MYB4_ORYSJ; Transcription factor MYB4
TrEMBLA0A438E8U03e-89A0A438E8U0_VITVI; Transcription factor MYB4
STRINGXP_010262320.13e-75(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.15e-60myb domain protein 15
Publications ? help Back to Top
  1. Park MR, et al.
    Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development.
    Plant Cell Environ., 2010. 33(12): p. 2209-30
    [PMID:20807373]
  2. Soltész A, et al.
    The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants.
    J. Appl. Genet., 2012. 53(2): p. 133-43
    [PMID:22246661]