PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01023582001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 243aa    MW: 26960.5 Da    PI: 8.1005
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01023582001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.21.1e-094792354
                AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                       +kGV    ++g W A+I+       + +r++lg++ ++ eAa a++ a+ kl+
  GSVIVT01023582001 47 FKGVV-PQQNGHWGAQIYA------NhQRIWLGTYKSETEAAMAYDSAAIKLR 92
                       78885.556899****999......44**********99************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.85846101IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-1546102IPR016177DNA-binding domain
CDDcd000181.43E-2246103No hitNo description
SMARTSM003802.2E-1846107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-1647101IPR001471AP2/ERF domain
PfamPF008474.8E-54792IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.104.2E-12166211IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-8167202IPR015300DNA-binding pseudobarrel domain
CDDcd100173.93E-8168197No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MEEEILSVIS NGGTNVIVEA SDSNSSSLPF HGSKRTKQGI SVSSGRFKGV VPQQNGHWGA  60
QIYANHQRIW LGTYKSETEA AMAYDSAAIK LRSGDNHRNF PWTNLTIQEP NFQSFFSTET  120
VVNMIKDGSY PSKFAEFLKT ESQRGETEVL SLDQVGVHRN GRFMCRLLFQ KELTPSDVGK  180
LNRLVIPKKY ATKHFPPISE SAEENEVGMN LPTKILPIST RDPVMQLHFC LNCGVNVLPN  240
AV*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4492000.0AM449200.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X088483.4, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002276492.11e-152PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680
SwissprotQ9C6882e-66RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLF6HYI21e-150F6HYI2_VITVI; Uncharacterized protein
STRINGVIT_11s0037g00010.t011e-151(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10227710
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.19e-69RAV family protein