PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01023585001
Common NameVIT_11s0037g00040
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 283aa    MW: 29322.7 Da    PI: 7.0435
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01023585001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.2e-12115160555
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  GSVIVT01023585001 115 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 160
                        99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-17108170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.59E-14108164No hitNo description
PROSITE profilePS5088817.39110159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-17112169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9115160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13116165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MLQQQLLFNG DSCLVDRSQN DVVDGSSSFK SPNQGGDGSV QALYNGFAGA LHGSGQASNQ  60
AQNFHHPQGG SMQAQNYGAP ATVMNQTPAT GSAGGAPAQP RQRVRARRGQ ATDPHSIAER  120
LRRERIAERM KALQELVPNA NKTDKASMLD EIIDYVKFLQ LQVKVLSMSR LGGAAAVAPL  180
VADMSSEGGG DCIQASGTSG PTGGRATNGT QTTTSNDSLT VTEHQVAKLM EEDMGSAMQY  240
LQGKGLCLMP ISLATAISTT TSTMGNGLAD APVKDAASVS KP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119124RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.184190.0fruit| leaf| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4865211e-118AM486521.2 Vitis vinifera contig VV78X151465.9, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010656596.10.0PREDICTED: transcription factor MYC2 isoform X1
SwissprotQ9ZUG91e-84BH066_ARATH; Transcription factor bHLH66
TrEMBLF6HYI30.0F6HYI3_VITVI; Uncharacterized protein
STRINGVIT_11s0037g00040.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.12e-47LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]