PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01023783001
Common NameVIT_03s0038g04760
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 346aa    MW: 37865.6 Da    PI: 6.3719
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01023783001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.1e-10155202455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  GSVIVT01023783001 155 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 202
                        8**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.45E-17149220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.60E-10149206No hitNo description
PROSITE profilePS5088815.618151201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-17151218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-7155202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-9157207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MPGTGFNVEN AGFESAGILN CSGFEMNHTT SRTSSCPLAA AEAKVRESVL PEKIASAVGR  60
ESFKKRKADK VQSPKVVAEE ETKDKRIKGC AEDGESKITE ANNNKNSTTT TTTTATTTTT  120
NNNNRETSAD TSKVSEVQKP DYIHVRARRG QATDSHSLAE RVRREKISER MKYLQDLVPG  180
CNKITGKAGM LDEIINYVQS LQRQVEFLSM KLAAVNPRLD FNIDNFLAKE VFPACAANFP  240
TIGMSSEMTN PSYLHYDPIQ QVATCGVEMG INPAEIALRR TISAPVSIPD TFLDSCFTQI  300
QPSSTWDADL QNLYGPEFHQ GRLMSFPSQA AFTGPIDASN LKMEM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.255280.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4470251e-143AM447025.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X110477.3, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002284113.10.0PREDICTED: transcription factor bHLH63
TrEMBLF6I0K50.0F6I0K5_VITVI; Uncharacterized protein
STRINGVIT_03s0038g04760.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.15e-68cryptochrome-interacting basic-helix-loop-helix 1