PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01023817001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bZIP
Protein Properties Length: 211aa    MW: 24343.4 Da    PI: 9.9891
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01023817001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.52.6e-1256101550
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                        ++ +r+++NRe+ArrsR RK++ ++ L   +++L +eN++ +  ++
  GSVIVT01023817001  56 RKRKRMISNRESARRSRMRKQKHLDDLMAQAAQLRKENSQIITSMN 101
                        6789**********************************99876655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.9E-1852116IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.2254117IPR004827Basic-leucine zipper domain
PfamPF001702.8E-956104IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.88E-1256109No hitNo description
Gene3DG3DSA:1.20.5.1701.7E-956128No hitNo description
CDDcd147026.49E-2157107No hitNo description
PROSITE patternPS0003605974IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MRLILKINYF CDKLDKNLVF LLILLVLIYS YILLLSFKLI PKLHNFLNLQ ALMDQRKRKR  60
MISNRESARR SRMRKQKHLD DLMAQAAQLR KENSQIITSM NVTTQHYFNI EAENSVLRAQ  120
FSELSNRLQY LVEIISFLNT SNGGFESGEP WTLPEPTTPD SLMNPLSLLY LSQPIMASDI  180
FQTSNLPGSL THKSQPTFSR RLMPNSCVDC *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15576RKRKRMISNRESARRSRMRKQK
26875RRSRMRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.77620.0flower| fruit| inflorescence| leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm and radicle tip in early germinating seeds. {ECO:0000269|PubMed:23461773}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00239DAPTransfer from AT1G75390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4846630.0AM484663.2 Vitis vinifera contig VV78X053765.4, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002283667.11e-94PREDICTED: bZIP transcription factor 44
SwissprotC0Z2L51e-45BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A438JTY33e-93A0A438JTY3_VITVI; BZIP transcription factor 44
TrEMBLF6I0M63e-93F6I0M6_VITVI; Uncharacterized protein
STRINGVIT_03s0038g04450.t015e-94(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5511678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.13e-48basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]