PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01024340001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C3H
Protein Properties Length: 95aa    MW: 10528.2 Da    PI: 10.4836
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01024340001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.61.1e-085580127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                       +kt+lC  f++ G C+y  +C+FaHg+
  GSVIVT01024340001 55 FKTKLCGKFRA-GVCPYITNCNFAHGM 80
                       79*********.*************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.0E-145285IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.21E-85285IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.2395481IPR000571Zinc finger, CCCH-type
SMARTSM003560.00175480IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-65580IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MIFKIGTNLW ATDDDYRSFT LTPKFSSGTT APDISPAKKS KNSQKSSKSM GKMFFKTKLC  60
GKFRAGVCPY ITNCNFAHGM EELRHALRRV AEVV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.100571e-129flower| fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4533121e-121AM453312.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X002638.10, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002271522.11e-41PREDICTED: zinc finger CCCH domain-containing protein 56
SwissprotQ9LQM33e-21C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A438H6F26e-40A0A438H6F2_VITVI; Zinc finger CCCH domain-containing protein 56
STRINGXP_009621747.13e-23(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP20451737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.13e-13C3H family protein