PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01024357001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 852aa    MW: 95788.7 Da    PI: 8.7086
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01024357001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.22.1e-141664148
                       TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                       + +WT+ Ed++l+++ k++G + +W+ +++   ++R++k+c++rw +yl
  GSVIVT01024357001 16 KSPWTPKEDQKLIRYMKRHGEPtRWTEVPKLARLNRCGKSCRLRWSQYL 64
                       679******************************************9997 PP
2Myb_DNA-binding391.8e-1270113146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg+++++E++ ++++   +G++ W  Ia  ++ gRt+ ++k++w++
  GSVIVT01024357001  70 RGNFSQDEEDTIIRLQSAHGNR-WVFIATQLP-GRTDSEIKNYWNT 113
                        89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.8121164IPR017930Myb domain
SuperFamilySSF466898.79E-2513111IPR009057Homeodomain-like
SMARTSM007174.8E-121566IPR001005SANT/Myb domain
PfamPF002495.6E-131664IPR001005SANT/Myb domain
CDDcd001671.98E-81864No hitNo description
Gene3DG3DSA:1.10.10.604.2E-211871IPR009057Homeodomain-like
PROSITE profilePS5129422.76365119IPR017930Myb domain
SMARTSM007175.5E-1469117IPR001005SANT/Myb domain
PfamPF002493.9E-1170113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-2272119IPR009057Homeodomain-like
CDDcd001675.42E-972115No hitNo description
PROSITE profilePS5099411.281404579IPR001584Integrase, catalytic core
SuperFamilySSF530983.6E-17499580IPR012337Ribonuclease H-like domain
Gene3DG3DSA:3.30.420.101.7E-10510582IPR012337Ribonuclease H-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015074Biological ProcessDNA integration
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 852 aa     Download sequence    Send to blast
MGPIITGGHG RNGLKKSPWT PKEDQKLIRY MKRHGEPTRW TEVPKLARLN RCGKSCRLRW  60
SQYLKPGIKR GNFSQDEEDT IIRLQSAHGN RWVFIATQLP GRTDSEIKNY WNTSLKKKLA  120
KKEIPPATQT PLFQPLLAAA VFLDSCANYI RDYALRLHSD ARLPNPQRHG VGFISTDPTG  180
AFPAQGPGFN YQAMEDPTVY YPDQFGPLIT NFLNTIPFPQ LNQNYAGHVG SLLGNIPPAT  240
QTPIQPLLPV ADWLASTAAY LRSYAPGLHS NAQLPNLHSL HNPVVQQGFG DITPDPEAQL  300
HGVGSISTDA AGALPGQGPG FNYQAMENPT VYNHPDQFGH LITSIPNMGV LIPDPKVNNN  360
YAADLGSLFG NVPNAGSTPA LMVSESSERS MTNQVENEMT PPTEEISPLE AWLEEFLSAE  420
NGETSDSFCG DVALVIYVKI TFLFYVLSGC HASTWRDLLK LNLFKKGPLF FVWTVITPLF  480
PALFSSVTLP FFHSIAFLCF RLKQQPTELL TIAYTPQQNG VVERKNQTVM EMAKAMLYEK  540
GLPKFFWVEA VNTVVYLLNR CPTKALLNKT LIEAWSGRNP SVRHFKVFGC LCYSQVPKER  600
RSKLDETSEK CIFMGYSSQS KGYRLYNLKT NKLIISRYVI FYEKAAWNWE KGKILKKTIL  660
VDELQIKTPV ETGNGSTSTS SPQDSPRSVP LSSSTESPTS SSSSPSSTPR KMRSLSDVYK  720
RCNLCIVEPQ SFEEAIKDED WRKAMEKEID VIEKNETWQL VEKPIDKEII GVKWIYRVKC  780
HSDGYICKNN FLFYVLSGCH ASTWRDLLKL NLFKKGPLFF VWTVITPLFP VGNYCKAPAR  840
ENGYWDQEFL E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-251411925128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4297370.0AM429737.2 Vitis vinifera contig VV78X204561.26, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLF6HEE50.0F6HEE5_VITVI; Uncharacterized protein
STRINGVIT_16s0039g01740.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10280.13e-46myb domain protein 92