PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01024359001
Common NameVIT_16s0039g01750
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 291aa    MW: 34001.3 Da    PI: 9.6476
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01024359001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.86.9e-10100147148
                        TSSS-HHHHHHHHHHH.HHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdav.kqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        r rWT+eEd  l ++  + l  + W  Ia+  g+ R++k+c++rw ++l
  GSVIVT01024359001 100 RPRWTEEEDRMLFECKgRNLDLP-WPDIAELAGLSRSGKSCRDRWKNHL 147
                        78*******97776662666777.***********************97 PP
2Myb_DNA-binding33.31.1e-10153199148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg++++eEde +++++  + +  W++ +  +  +R++k+c++rw ++l
  GSVIVT01024359001 153 RGNFSQEEDETIIRLHSSHENSIWRASSCQLE-NRSGKSCRERWKNHL 199
                        89************************888887.*************97 PP
3Myb_DNA-binding537.7e-17205250148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg++++eEde +++++  +G+  W+ Ia +++ gRt++ +k+rw+ +l
  GSVIVT01024359001 205 RGNFSQEEDETIIRLHSSHGNS-WAFIATHLP-GRTDNALKNRWNHHL 250
                        89******************99.*********.************886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.7834894IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.8E-75095IPR009057Homeodomain-like
SuperFamilySSF466891.59E-65195IPR009057Homeodomain-like
SMARTSM00717125298IPR001005SANT/Myb domain
CDDcd001670.001285595No hitNo description
PROSITE profilePS5129416.4195151IPR017930Myb domain
SMARTSM007175.9E-999149IPR001005SANT/Myb domain
SuperFamilySSF466891.93E-17102174IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-17102164IPR009057Homeodomain-like
CDDcd001671.07E-5102147No hitNo description
PfamPF139214.1E-13103162No hitNo description
PROSITE profilePS5009010.302148199IPR017877Myb-like domain
SMARTSM007172.2E-7152201IPR001005SANT/Myb domain
CDDcd001676.82E-6155199No hitNo description
Gene3DG3DSA:1.10.10.606.7E-18165206IPR009057Homeodomain-like
SuperFamilySSF466898.72E-24182253IPR009057Homeodomain-like
PROSITE profilePS5129426.376200254IPR017930Myb domain
SMARTSM007174.4E-16204252IPR001005SANT/Myb domain
PfamPF002497.6E-15205249IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-24207254IPR009057Homeodomain-like
CDDcd001677.98E-10207250No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009032anatomypetal
PO:0007016developmental stagewhole plant flowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGRASLVFFA VIVFIYLFSC SIFHGSSFIG LISSISAGKS VMETPQQTSG LETRPWTKEE  60
DQKLFECKSK NRHLSWPEIA MLTELERSRK RCRERPEEQR PRWTEEEDRM LFECKGRNLD  120
LPWPDIAELA GLSRSGKSCR DRWKNHLDPN VKRGNFSQEE DETIIRLHSS HENSIWRASS  180
CQLENRSGKS CRERWKNHLD SNVKRGNFSQ EEDETIIRLH SSHGNSWAFI ATHLPGRTDN  240
ALKNRWNHHL KNKLIGREDK LGLLGFSESK EKEAERFRNE RRRLGVFRFS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C7e-32562546159MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-32562546159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4468971e-156AM446897.2 Vitis vinifera contig VV78X206832.1, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010662177.11e-138PREDICTED: trichome differentiation protein GL1
TrEMBLD7T7M20.0D7T7M2_VITVI; Uncharacterized protein
STRINGVIT_16s0039g01750.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65230.11e-29myb domain protein 53