PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01024536001
Common NameLOC100250145, VIT_06s0004g08270
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family B3
Protein Properties Length: 315aa    MW: 35606.3 Da    PI: 9.9992
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01024536001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.31.2e-17133223199
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        f+k +++s+v +  +l lp kf+e+h  +k+   +++lede+g ++   +   +k+ +  l++GW++F+ +++L++gD +vF+l++  +f  
  GSVIVT01024536001 133 FVKSMVRSHVYSCFWLGLPSKFCEDHL-PKT-LLDMVLEDENGTEYGAVY--IGKRTG--LSGGWRGFALDHKLDDGDALVFELIEPARF-- 216
                        89**********************995.444.459***************..555544..***********************9986666.. PP

                        EEEEE-S CS
                 B3  93 vvkvfrk 99 
                        +v ++r+
  GSVIVT01024536001 217 KVYIVRA 223
                        8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.2E-21125224IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-23127225IPR015300DNA-binding pseudobarrel domain
CDDcd100172.96E-26131222No hitNo description
PfamPF023622.2E-16133223IPR003340B3 DNA binding domain
PROSITE profilePS5086312.816133224IPR003340B3 DNA binding domain
SMARTSM010195.9E-26133224IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MLYSEVRARK QHLEENKKRL EDLGILKISQ SLSLLTNSNS KSQKRPPKPK PESVYMLEPR  60
RSSRVRNSVA SYCDEVDISL RPLRKRSKLN SSWASYLARP LNEVITASYE ERVHAIKAAE  120
EIQSNLQSGN PSFVKSMVRS HVYSCFWLGL PSKFCEDHLP KTLLDMVLED ENGTEYGAVY  180
IGKRTGLSGG WRGFALDHKL DDGDALVFEL IEPARFKVYI VRASEVSSKK NDADVDEVHS  240
AAKRRSKRAT RLNKCNESEP KQDRKSTQKV IESSESTVHQ GGGVKNEDEL EDVNATEGPR  300
KRITRSKRLT KKLS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4238581e-157AM423858.2 Vitis vinifera contig VV78X121585.6, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010650799.10.0PREDICTED: putative B3 domain-containing protein At5g58280 isoform X1
SwissprotQ9FHB22e-69Y5828_ARATH; Putative B3 domain-containing protein At5g58280
TrEMBLF6GU710.0F6GU71_VITVI; Uncharacterized protein
STRINGVIT_06s0004g08270.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9951658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.13e-61B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]