PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01024687001

Common Name

VIT_06s0004g07000

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

G2-like

Protein Properties

Length: 178aa MW: 20137.7 Da PI: 9.2088

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01024687001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.9	1.8e-31	67	120	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+e+AtPk + +lm++kgL+++hvkSHLQ+YR+ GSVIVT01024687001 67 PRLRWTPNLHLCFVRAVERLGGQERATPKLVQQLMNIKGLSIAHVKSHLQMYRS 120 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.7E-29	63	121	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.239	63	123	IPR017930	Myb domain
SuperFamily	SSF46689	2.51E-14	65	121	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-22	67	122	IPR006447	Myb domain, plants
Pfam	PF00249	7.9E-9	68	119	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0009005	anatomy	root
PO:0007520	developmental stage	root development stage

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MERSMEESGK DDGSKTIDPF DGKDDEQEDD GNKTKTSVSS GNSVVDQESE KKTTSNGVRQ 60 YVRSKVPRLR WTPNLHLCFV RAVERLGGQE RATPKLVQQL MNIKGLSIAH VKSHLQMYRS 120 KKIDDKGQVI NSRGQLHPNG SAVHNLWQLP TFESIDQRVG FNFRYKTMCA CFDLYKC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-18	68	122	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-18	68	122	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-18	68	122	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-18	68	122	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-18	68	122	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-18	68	122	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-18	68	122	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-18	68	122	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-18	68	122	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-18	68	122	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-18	68	122	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-18	68	122	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM444312	1e-147	AM444312.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X133795.13, clone ENTAV 115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002278456.1	1e-118	PREDICTED: uncharacterized protein LOC100246669
TrEMBL	D7SJT9	1e-131	D7SJT9_VITVI; Uncharacterized protein
STRING	VIT_06s0004g07000.t01	1e-131	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP285	15	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	8e-49	G2-like family protein

Link Out ? help Back to Top
Phytozome	GSVIVT01024687001