PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01024902001
Common NameLOC104879616, VIT_06s0004g05260
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C2H2
Protein Properties Length: 193aa    MW: 20968.4 Da    PI: 7.5066
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01024902001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.3e-053052123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y+C+ C++ Fs+   L  H++ H
  GSVIVT01024902001 30 YECTFCKRGFSTAQALGGHMNIH 52
                       99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.18E-72757No hitNo description
Gene3DG3DSA:3.30.160.602.4E-52756IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139128.6E-73054IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.513057IPR007087Zinc finger, C2H2
SMARTSM003550.00993052IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803252IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
METDHQTLET TSDQVVCTSD DQGPSQARSY ECTFCKRGFS TAQALGGHMN IHRKDKAKLK  60
KASNEAQQYS LDITKPASLF SPIPTNAKDP LQAMYSEERS KIAWPNWIVS GEDTTIRAQT  120
RVGEPQKLTF LGETPSNTRD RMLTSQDMIS TVNAGKGLSS GQGSSGAELD LELRLGPEPH  180
GPSKATGTKK FF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4460190.0AM446019.2 Vitis vinifera contig VV78X070138.9, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010651444.11e-143PREDICTED: transcriptional regulator TAC1-like
TrEMBLD7SKA41e-141D7SKA4_VITVI; Uncharacterized protein
STRINGVIT_06s0004g05260.t011e-142(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP19981133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.13e-17C2H2 family protein