PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01025155001
Common NameLOC100248443, VIT_06s0004g03160
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family S1Fa-like
Protein Properties Length: 90aa    MW: 9935.84 Da    PI: 10.3053
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01025155001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA131.81.8e-412489570
               S1FA  5 kveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                        ++akG+nPGlivll+v glllvflvgny+lyvyaqk+lPPrkkkPvskkk+k+e+lkqGv++PGe
  GSVIVT01025155001 24 DADAKGFNPGLIVLLLVVGLLLVFLVGNYALYVYAQKTLPPRKKKPVSKKKMKKERLKQGVSAPGE 89
                       6789*************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0190130.0012189No hitNo description
PfamPF046892.5E-402589IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MEEDFEFADK VPPSFERMGN VIKDADAKGF NPGLIVLLLV VGLLLVFLVG NYALYVYAQK  60
TLPPRKKKPV SKKKMKKERL KQGVSAPGE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.24611e-140bud| fruit| inflorescence| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3850371e-149FQ385037.1 Vitis vinifera clone SS0AEB3YJ10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002285012.13e-57PREDICTED: DNA-binding protein S1FA
RefseqXP_010651138.13e-57PREDICTED: DNA-binding protein S1FA
RefseqXP_010651139.13e-57PREDICTED: DNA-binding protein S1FA
SwissprotQ7XLX62e-16S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBLD7SKV66e-56D7SKV6_VITVI; Uncharacterized protein
STRINGVIT_06s0004g03160.t011e-56(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP50951322
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]