PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01025169001
Common NameLOC100243337, VIT_06s0004g03030
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NF-YC
Protein Properties Length: 426aa    MW: 47620.2 Da    PI: 10.4745
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01025169001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC41.13.9e-133314101998
              NF-YC  19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 
                         ++P++ri +i+++d d  +is ea  l+ ka e f+ ++   ++  + + +++ +    ia+av++ + fdfl d vp+
  GSVIVT01025169001 331 YNFPMSRIERIVRSDCDDVRISQEALFLINKASEEFLQQFVNDAYACSVKDRKNYVSYKHIASAVSKCKRFDFLSDFVPE 410
                        589**************99***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.29E-20313410IPR009072Histone-fold
Gene3DG3DSA:1.10.20.103.1E-23333410IPR009072Histone-fold
PfamPF008082.9E-14333395IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MPTSVSEFEL ELGEMRSRRL IEKPSGRRKG KQLSISKINH ELSEIVTIPS SSSDDEANTT  60
SLHQKADETL LHQKKKKKEP KVETKKKTGA KVETKKKTGA KVETKKKTGA KVETKKKKEE  120
KEDESAAHLK KRKNKGEESV AHKKKKLKKE AGKGSLGQKN EKGEGESVAP KKKNGKGQEE  180
SKGTLKKKRK KEDEEEGVTL PKAKGKGKGE EENKGSMKKK KKEEEDTGGV VNQKKKGKGE  240
GESSKANLKK KKKKGEGEGR EGAATQKENQ KKAGEEVTPA HLEINDKKNE KKKKKENKGN  300
EEEKLANLKS NEKKNEKDEE KKKKGGAHCG YNFPMSRIER IVRSDCDDVR ISQEALFLIN  360
KASEEFLQQF VNDAYACSVK DRKNYVSYKH IASAVSKCKR FDFLSDFVPE RVSAEKALAE  420
RSAKT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17385KKKKKEPKVETKK
2130148KRKNKGEESVAHKKKKLKK
3186190KKRKK
4233253KKKGKGEGESSKANLKKKKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.151670.0inflorescence
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4735990.0AM473599.2 Vitis vinifera contig VV78X109735.23, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010651147.10.0PREDICTED: vicilin-like seed storage protein At2g18540 isoform X1
TrEMBLD7SKW80.0D7SKW8_VITVI; Uncharacterized protein
STRINGVIT_06s0004g03030.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP86701112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.19e-28nuclear factor Y, subunit C10