PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01025313001
Common NameVIT_06s0004g01740
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 298aa    MW: 31759.4 Da    PI: 9.4551
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01025313001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.3e-12231276655
                        HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +++Er RR ri +++ +L+el+P+     +k  + +++L +Av+YIk+Lq
  GSVIVT01025313001 231 SIAERVRRTRISERMRKLQELVPNM----DKQTNTSDMLDLAVDYIKDLQ 276
                        689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.9225275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-16228287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.38E-13229280No hitNo description
Gene3DG3DSA:4.10.280.105.4E-15230287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9231276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-13231281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MPHHNSAAPG TVENSYSAVS SMGMDQSQQI KIGGGNNSNL IRHSSSPAGL FSHLNVENGY  60
AIMRGMGNFG SGSGTNGEPS FSSASRLKGQ INFSSGPPSS SGLVTPISEM GNKSMGTGSP  120
DNGSFGEGHS NSGGFITGFP IGSWDDSAIM SESFSSLKSV RDDEAKTFSG LNASEAQKGE  180
PANRPPVLAH HLSLPTKTSA DLTTIEKYLQ FQDSVPCKIR AKRGCATHPR SIAERVRRTR  240
ISERMRKLQE LVPNMDKQTN TSDMLDLAVD YIKDLQKQVK TLSDNRAKCT CSNKQKP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.144840.0flower
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3930290.0FQ393029.1 Vitis vinifera clone SS0AFA2YP14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010651260.10.0PREDICTED: transcription factor bHLH130 isoform X1
SwissprotQ66GR34e-81BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A438JVD70.0A0A438JVD7_VITVI; Transcription factor bHLH130
TrEMBLD7SL880.0D7SL88_VITVI; Uncharacterized protein
STRINGVIT_06s0004g01740.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5111580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.12e-83bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]