PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01025324001
Common NameLOC100248434, VIT_06s0004g01610
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family EIL
Protein Properties Length: 590aa    MW: 66669.7 Da    PI: 6.3918
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01025324001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3427.61.2e-130383771342
                        XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
               EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLr 92 
                        eel++rmwkd+++lkr+ker+k     +++a++++k +   ++arrkkmsraQDgiLkYMlk mevc+a+GfvYgiipekgkpv+gasd++r
  GSVIVT01025324001  38 EELERRMWKDRIKLKRIKERQKIT---AQQAAEKQKPKPNADHARRKKMSRAQDGILKYMLKLMEVCKARGFVYGIIPEKGKPVSGASDNIR 126
                        8*****************999964...34458999********************************************************* PP

                        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHH CS
               EIN3  93 aWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgel 184
                        aWWkekv+fd+ngpaai+ky+a++l++ +++++  ++ +++++l++lqD+tlgSLLs+lmqhcdppqr++plekgv+pPWWP+G+e+ww +l
  GSVIVT01025324001 127 AWWKEKVKFDKNGPAAIAKYEAECLAMVENENN--RNGNSQSTLQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGVPPPWWPSGNEDWWVKL 216
                        **************************9988888..689999*************************************************** PP

                        T--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXX.........XX CS
               EIN3 185 glskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahss.........sl 267
                        gl+++q+ ppykkphdlkk+wkv+vLtavikhmsp+i++ir+l+rqsk+lqdkm+akes ++l vln+ee+++++ s+++          + 
  GSVIVT01025324001 217 GLARSQS-PPYKKPHDLKKMWKVGVLTAVIKHMSPDISKIRRLVRQSKCLQDKMTAKESSIWLGVLNREESLIRQPSSDNGtsgitgtppNG 307
                        ******9.9**********************************************************************5543455544433 PP

                        XXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXX CS
               EIN3 268 rkqspkvtlsceqkedvegkkeskikhvqavkttagfpvvrkrkkkpsesakvsskevsrtcqssqfrgseteli 342
                        +++++kv ++  + e     +++  + +q v+ +++   + krk++ ++s+ v+++++ ++ ++ + ++ ++   
  GSVIVT01025324001 308 HDGKNKVAMDIASFE-----DDRDNSGAQPVQDKKKGRKQLKRKRPHVKSRPVNQESAPSLEENLHEESRNSLQH 377
                        334444444433332.....2222244444444445556666666666666666665544444444433333222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048735.1E-12738285No hitNo description
Gene3DG3DSA:1.10.3180.103.2E-72159293IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167683.4E-62166289IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0042762Biological Processregulation of sulfur metabolic process
GO:0071281Biological Processcellular response to iron ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MGEFEEIGVD MCSDIEVDEV RCENIAEKDV SDEEIEAEEL ERRMWKDRIK LKRIKERQKI  60
TAQQAAEKQK PKPNADHARR KKMSRAQDGI LKYMLKLMEV CKARGFVYGI IPEKGKPVSG  120
ASDNIRAWWK EKVKFDKNGP AAIAKYEAEC LAMVENENNR NGNSQSTLQD LQDATLGSLL  180
SSLMQHCDPP QRKYPLEKGV PPPWWPSGNE DWWVKLGLAR SQSPPYKKPH DLKKMWKVGV  240
LTAVIKHMSP DISKIRRLVR QSKCLQDKMT AKESSIWLGV LNREESLIRQ PSSDNGTSGI  300
TGTPPNGHDG KNKVAMDIAS FEDDRDNSGA QPVQDKKKGR KQLKRKRPHV KSRPVNQESA  360
PSLEENLHEE SRNSLQHLHN EPRNSLPDIN HNDAQLAPYE MLGTQQENDR VTSLRPLEKD  420
LENQSQLPEP EFNHFSAFPS ANAISTQSMY VGGRPLLYPA VQNAELHHGT PYEFYNPPSD  480
YGHNPDGQQS HMAMNETQMR LEDGRIHEPE LNRNGNDISG GNLRHYVKDT FHSGQDRPVE  540
SHYGSPIESL SLDFGGFNSP FDLGIDGTSL GTPDIDYLLD DDLIQYFGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wij_A2e-741652969140ETHYLENE-INSENSITIVE3-like 3 protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.224120.0cell culture
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00233DAPTransfer from AT1G73730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4715370.0AM471537.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X037171.18, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019076322.10.0PREDICTED: ETHYLENE INSENSITIVE 3-like 3 protein isoform X2
SwissprotO231160.0EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBLF6GU990.0F6GU99_VITVI; Uncharacterized protein
STRINGVIT_06s0004g01610.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5631682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73730.10.0ETHYLENE-INSENSITIVE3-like 3
Publications ? help Back to Top
  1. Frerigmann H,Gigolashvili T
    Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency.
    Front Plant Sci, 2014. 5: p. 626
    [PMID:25426131]
  2. Zheng ZL,Zhang B,Leustek T
    Transceptors at the boundary of nutrient transporters and receptors: a new role for Arabidopsis SULTR1;2 in sulfur sensing.
    Front Plant Sci, 2014. 5: p. 710
    [PMID:25566284]
  3. Panda SK,Sunkar R
    Nutrient- and other stress-responsive microRNAs in plants: Role for thiol-based redox signaling.
    Plant Signal Behav, 2015. 10(4): p. e1010916
    [PMID:25912823]
  4. Wawrzyńska A,Sirko A
    EIN3 interferes with the sulfur deficiency signaling in Arabidopsis thaliana through direct interaction with the SLIM1 transcription factor.
    Plant Sci., 2016. 253: p. 50-57
    [PMID:27968996]