PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01025360001

Common Name

LOC100263958, VIT_06s0004g01290

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

C3H

Protein Properties

Length: 245aa MW: 25706.2 Da PI: 9.8597

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01025360001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.1	9.7e-11	210	234	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC +f + G C +G+rC+FaHg GSVIVT01025360001 210 FKTKLCENFTK-GSCTFGERCHFAHG 234 69*******.***********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.7	37	64	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.042	37	65	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.36E-6	38	63	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.6E-7	39	62	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF54791	3.07E-15	111	187	IPR004088	K Homology domain, type 1
SMART	SM00322	3.9E-12	116	186	IPR004087	K Homology domain
Gene3D	G3DSA:3.30.1370.10	3.9E-16	117	185	IPR004088	K Homology domain, type 1
PROSITE profile	PS50084	14.194	117	181	IPR004088	K Homology domain, type 1
Pfam	PF00013	1.6E-11	119	183	IPR004088	K Homology domain, type 1
CDD	cd00105	1.13E-13	121	181	No hit	No description
Gene3D	G3DSA:4.10.1000.10	1.1E-16	208	241	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.76E-9	209	240	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.3E-7	209	235	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.464	209	236	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.2E-8	210	234	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003723	Molecular Function	RNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MELGGARKRG RQEGTLNGNG GFKKSKQEME SFSSGIGSKS KPCTKFFSTS GCPFGEGCHF 60 LHYVPGGIKA VSQMWELGKP TLPSHHEDHR GMGSGRLAGR LEPPPPGLAA AASFGASATA 120 KISVDASLAG AIIGKSGVNS KQICRLTGAK LSIKDHDSDP NLRNIELEGT FDQIKQASAM 180 VRELIVNISS ASGPPMRNPA MQASAAANNF KTKLCENFTK GSCTFGERCH FAHGADELRK 240 PAGM*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.12629	0.0	bud\| flower\| fruit\| inflorescence

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM469169	0.0	AM469169.2 Vitis vinifera contig VV78X242078.3, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002285629.1	1e-145	PREDICTED: zinc finger CCCH domain-containing protein 14
Swissprot	Q9C7C3	1e-94	C3H36_ARATH; Zinc finger CCCH domain-containing protein 36
TrEMBL	F6GUE5	1e-144	F6GUE5_VITVI; Uncharacterized protein
STRING	VIT_06s0004g01290.t01	1e-145	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1026	17	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12130.1	7e-87	C3H family protein

Link Out ? help Back to Top
Phytozome	GSVIVT01025360001
Entrez Gene	100263958

Publications ? help Back to Top
Yan Z,Jia J,Yan X,Shi H,Han Y Arabidopsis KHZ1 and KHZ2, two novel non-tandem CCCH zinc-finger and K-homolog domain proteins, have redundant roles in the regulation of flowering and senescence. Plant Mol. Biol., 2017. 95(6): p. 549-565 [PMID:29076025]