PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01025491001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family WRKY
Protein Properties Length: 122aa    MW: 14215.9 Da    PI: 4.8027
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01025491001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY22.71.9e-0791107218
                        --SS-EEEEEEE--TT- CS
               WRKY   2 dDgynWrKYGqKevkgs 18 
                         Dgy+W+KYGqK +k+ 
  GSVIVT01025491001  91 ADGYEWKKYGQKFIKNI 107
                        6*************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-683111IPR003657WRKY domain
SuperFamilySSF1182903.4E-686112IPR003657WRKY domain
PfamPF031064.0E-592114IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MQTNQQPHFT LPSLFLSLSV AEKPKDTFLL SFSFLSFPGR WAGESFERTS EELAAMNEAS  60
HLTRDASMEA FEEFREGQET ERSSYRLVLP ADGYEWKKYG QKFIKNIGKF RYEFEQTYIE  120
M*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4290461e-110AM429046.2 Vitis vinifera contig VV78X149461.45, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003632174.23e-34PREDICTED: probable WRKY transcription factor 3
TrEMBLF6GUN92e-75F6GUN9_VITVI; Uncharacterized protein
STRINGVIT_06s0004g00230.t013e-76(Vitis vinifera)