PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01025648001
Common NameLOC100241470, VIT_08s0040g02220
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family S1Fa-like
Protein Properties Length: 90aa    MW: 10132.1 Da    PI: 10.2814
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01025648001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA124.82.8e-392289370
               S1FA  3 vakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                       v+ +eakG+nPGlivll+v g+llvflvgn++ly+yaqk+lP  kkkPvskkk+kre+lkqGv++PGe
  GSVIVT01025648001 22 VKDAEAKGFNPGLIVLLLVVGVLLVFLVGNFLLYMYAQKTLPRMKKKPVSKKKMKRERLKQGVSAPGE 89
                       6789***************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046893.1E-382589IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MDDEFEFAEK VPPSFDRMEN MVKDAEAKGF NPGLIVLLLV VGVLLVFLVG NFLLYMYAQK  60
TLPRMKKKPV SKKKMKRERL KQGVSAPGE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.129401e-149flower| fruit| inflorescence| stem
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4541721e-118AM454172.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X099447.7, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002279933.12e-57PREDICTED: DNA-binding protein S1FA
SwissprotP425533e-16S1FA1_ORYSJ; DNA-binding protein S1FA1
TrEMBLA0A438IPU24e-56A0A438IPU2_VITVI; DNA-binding protein S1FA1
TrEMBLD7TQI44e-56D7TQI4_VITVI; Uncharacterized protein
STRINGVIT_08s0040g02220.t016e-57(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP50951322