PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01025710001
Common NameLOC100263609, VIT_08s0040g01640
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB_related
Protein Properties Length: 543aa    MW: 59638 Da    PI: 7.5454
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01025710001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.62.9e-08413460448
                        S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                        WT  E  +lvd+v  +G g+W+ I r +      Rt+ +++++w+++l
  GSVIVT01025710001 413 WTLSEVMKLVDGVSHYGVGRWTDIKRLLFsssAYRTPVDLRDKWRNLL 460
                        ********************************99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-11404464IPR009057Homeodomain-like
PROSITE profilePS5129414.251405464IPR017930Myb domain
SuperFamilySSF466891.12E-15407462IPR009057Homeodomain-like
SMARTSM007172.6E-9409462IPR001005SANT/Myb domain
PfamPF002492.4E-6413460IPR001005SANT/Myb domain
CDDcd116601.49E-18413461No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MVQEAPSLKK YVNMKCQRVN EDESFVPALE DEAIEVEHLL AEPKNDNVSV DGVLSLKKCL  60
DIEDIPGRFE CGLESHSGGM DSNTTREGED ELKLGVFDGM LHEVAEVGDL HATNSLSGAC  120
EDYLLDIEFA ETVSELDNGP CAGSHLGNSS SESHSPGFSG SDNGAVGISE SSTGTIPVPE  180
CGNNLDKMTI CTLHGTSRSK CECKMLVEGK MELQGSASFN LQNPDGVDNV SNLVSGIPLV  240
ENRKDVTFTN LQYNKASSIG QGMKKESFAG RKGSRKRSVE ASDVGMLLSE KRMRRPTRRY  300
IEEFSDLKSK SNRGRPKNST TTTKNKLLGN RHRSETHHKG FSAAPLVPSG SYGRSSDRTP  360
FEVGVQKGCL KKYASISDLD SDEESSPAES EDDCMTIKRP ETSGDRRKHQ RLWTLSEVMK  420
LVDGVSHYGV GRWTDIKRLL FSSSAYRTPV DLRDKWRNLL RASCAQLQSK REVEQKRKHA  480
MRPLPQTLLH RVSELAIIHP YPKGSNSKLP HVGHVTSAML PTTSKDAPSS LGRRLVPRKN  540
CT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.213340.0bud| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3819900.0FQ381990.1 Vitis vinifera clone SS0ABG76YG14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010653588.10.0PREDICTED: uncharacterized protein LOC100263609
RefseqXP_010653589.10.0PREDICTED: uncharacterized protein LOC100263609
TrEMBLD7TQN40.0D7TQN4_VITVI; Uncharacterized protein
STRINGVIT_08s0040g01640.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP16451536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.22e-26TRF-like 6