PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01025785001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family G2-like
Protein Properties Length: 78aa    MW: 8176.34 Da    PI: 10.7013
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01025785001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like36.79.1e-121243356
            G2-like 33 lelmkvkgLtlehvkSHLQkYRla 56
                       ++lm+v+gLt+e+v+SHLQkYRl+
  GSVIVT01025785001  1 MQLMSVDGLTRENVASHLQKYRLY 24
                       79********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-11128IPR009057Homeodomain-like
SuperFamilySSF466896.63E-6227IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-8223IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MQLMSVDGLT RENVASHLQK YRLYLKRMQG LSAGGGGRAS SEHFLPFVPV AASSTAADSV  60
PSPQAGGTFR VPSKWAI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.95082e-56fruit| inflorescence| leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is essential for the generation of the circadian clock oscillation. Binds to specific sites on CCA1 promoter leading to CCA1 activation (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian oscillation with peaks at subjective dusk. {ECO:0000269|PubMed:16164597}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4303635e-54AM430363.2 Vitis vinifera contig VV78X034239.9, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021971195.13e-20transcription factor MYBC1
SwissprotQ94DH36e-15PCL1_ORYSJ; Transcription factor PCL1
TrEMBLA0A251VLK91e-18A0A251VLK9_HELAN; Putative homeodomain-like superfamily protein
STRINGLus100121029e-18(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11571753
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.15e-15G2-like family protein